Variant report

Variant	rs558120757
Chromosome Location	chr11:59546297-59546298
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59521605..59525070-chr11:59543036..59549785,6	MCF-7	breast:
2	chr11:59520565..59526888-chr11:59540206..59546311,15	MCF-7	breast:
3	chr11:59545569..59549686-chr11:59550109..59554900,5	MCF-7	breast:
4	chr11:59544185..59546804-chr11:59574594..59577014,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254477	Chromatin interaction
ENSG00000166900	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
2	nsv972034	chr11:59545783-59549447	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59524400-59557000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:59524600-59557400	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:59524600-59573800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:59524800-59553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:59524800-59555400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:59525400-59551200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:59525600-59557800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:59534400-59559600	Weak transcription	Fetal Brain Female	brain
9	chr11:59534600-59554200	Weak transcription	HSMMtube	muscle
10	chr11:59534600-59571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:59537600-59570400	Weak transcription	Fetal Kidney	kidney
12	chr11:59537800-59553200	Weak transcription	NHDF-Ad	bronchial
13	chr11:59539400-59546600	Weak transcription	Esophagus	oesophagus
14	chr11:59539600-59554200	Weak transcription	Right Ventricle	heart
15	chr11:59539800-59553000	Weak transcription	Spleen	Spleen
16	chr11:59539800-59554400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:59540800-59550400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:59540800-59556200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:59540800-59559600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:59541000-59560000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:59541000-59573600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:59541400-59553000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:59541600-59551800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:59541800-59548200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:59541800-59559200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:59542200-59571400	Weak transcription	Thymus	Thymus
27	chr11:59542400-59547600	Genic enhancers	Fetal Intestine Small	intestine
28	chr11:59542600-59554200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:59542800-59547800	Enhancers	Stomach Mucosa	stomach
30	chr11:59542800-59557800	Weak transcription	Fetal Stomach	stomach
31	chr11:59543000-59553000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:59543000-59553400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:59543000-59554200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:59543200-59547200	Weak transcription	Osteobl	bone
35	chr11:59543200-59551200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:59543200-59554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:59543200-59554200	Weak transcription	Adipose Nuclei	Adipose
38	chr11:59543200-59554600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:59543200-59557000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:59543200-59559200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:59543400-59549400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:59543600-59546400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:59543600-59546400	Enhancers	HepG2	liver
44	chr11:59543600-59546800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:59543600-59547000	Enhancers	Pancreas	Pancrea
46	chr11:59543600-59547800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:59543600-59548000	Weak transcription	Primary B cells from cord blood	blood
48	chr11:59543600-59551200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:59543600-59554200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:59543800-59547000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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