Variant report

Variant	rs55812282
Chromosome Location	chr2:182164923-182164924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16867400	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867401	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867402	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867405	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16867406	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16867413	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17270875	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182160200-182165400	Weak transcription	Fetal Thymus	thymus
2	chr2:182160400-182165400	Weak transcription	Thymus	Thymus
3	chr2:182163800-182165400	Enhancers	Dnd41	blood
4	chr2:182164000-182167800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr2:182164200-182165400	Weak transcription	Primary T cells from cord blood	blood
6	chr2:182164200-182165800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:182164200-182166000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:182164200-182168000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:182164400-182165400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:182164600-182165200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:182164600-182165400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:182164600-182165400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr2:182164600-182165400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr2:182164600-182165600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr2:182164800-182165200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr2:182164800-182165200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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