Variant report

Variant	rs558125708
Chromosome Location	chr9:117484049-117484050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831694	chr9:117328640-117502785	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893766	chr9:117385992-117516418	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042718	chr9:117435306-117488969	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv825060	chr9:117483259-117484487	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117479000-117484200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr9:117480200-117485000	Enhancers	HMEC	breast
3	chr9:117480400-117484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:117480400-117485000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:117480600-117484800	Enhancers	NHEK	skin
6	chr9:117481000-117484400	Enhancers	Esophagus	oesophagus
7	chr9:117481200-117484200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:117481200-117486000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:117481400-117488800	Enhancers	NHDF-Ad	bronchial
10	chr9:117481600-117485600	Weak transcription	NH-A	brain
11	chr9:117482000-117484400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:117482400-117484400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:117482400-117484400	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:117482600-117487000	Enhancers	Osteobl	bone
15	chr9:117483400-117484400	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr9:117483400-117484600	Enhancers	Liver	Liver
17	chr9:117483400-117484600	Enhancers	Fetal Intestine Small	intestine
18	chr9:117483400-117484800	Enhancers	Fetal Intestine Large	intestine
19	chr9:117483600-117488800	Enhancers	NHLF	lung
20	chr9:117483800-117484200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:117483800-117484200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr9:117483800-117484400	Enhancers	A549	lung
23	chr9:117484000-117484200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:117484000-117484200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:117484000-117484200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:117484000-117484200	Enhancers	Hela-S3	cervix
27	chr9:117484000-117484200	Enhancers	HepG2	liver
28	chr9:117484000-117484400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:117484000-117485000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:117484000-117486400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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