Variant report

Variant	rs55813455
Chromosome Location	chr10:58347250-58347251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:58346871..58349130-chr10:58356428..58359069,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs16909077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909101	1.00[AMR][1000 genomes]
rs1878626	0.85[AFR][1000 genomes]
rs1949439	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55818019	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55881143	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55965686	1.00[AMR][1000 genomes]
rs55985809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56015158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56784853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57038393	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57195018	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58155203	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59408429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59566363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59677411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60211720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60532981	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61091864	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61704964	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72804993	0.85[AFR][1000 genomes]
rs74137807	0.91[AFR][1000 genomes]
rs74137810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137814	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137816	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137821	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137822	1.00[AMR][1000 genomes]
rs74137826	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137827	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137829	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137830	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137896	1.00[AMR][1000 genomes]
rs74137900	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138707	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138708	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138765	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1041942	chr10:58290439-58451787	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540647	chr10:58290439-58451787	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv517747	chr10:58296224-58473735	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1037949	chr10:58300798-58354925	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1036583	chr10:58326465-58482756	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1037820	chr10:58328507-58480790	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1045583	chr10:58328507-58482756	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1054652	chr10:58328507-58485001	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2760127	chr10:58328519-58485013	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv551063	chr10:58329209-58473735	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1037340	chr10:58329209-58480790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1054588	chr10:58329209-58482756	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1054062	chr10:58329209-58485001	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1043534	chr10:58330520-58480790	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1047489	chr10:58330520-58482756	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1045015	chr10:58334902-58482756	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv1047726	chr10:58334902-58485001	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv1048186	chr10:58343941-58475146	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv540648	chr10:58343941-58475146	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	nsv1039709	chr10:58343941-58522183	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	nsv540649	chr10:58343941-58522183	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58346000-58347400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:58346400-58347600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:58346400-58354000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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