Variant report

Variant	rs558142877
Chromosome Location	chr1:85239576-85239577
allele	-/GGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85238570..85240771-chr1:85245143..85248001,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516470	chr1:85239564-85241298	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85231400-85240400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:85235600-85240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:85237800-85239800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:85237800-85240000	Enhancers	NHEK	skin
5	chr1:85238000-85239600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:85238000-85239800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:85238000-85240800	Enhancers	Fetal Brain Female	brain
8	chr1:85238000-85241200	Enhancers	HMEC	breast
9	chr1:85238200-85239800	Enhancers	Fetal Intestine Small	intestine
10	chr1:85238200-85240200	Enhancers	Esophagus	oesophagus
11	chr1:85238200-85240600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:85238200-85241000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:85238600-85239600	Weak transcription	Brain Anterior Caudate	brain
14	chr1:85238600-85239800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:85238600-85239800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:85238600-85239800	Weak transcription	Fetal Brain Male	brain
17	chr1:85238600-85240000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:85238600-85242000	Weak transcription	Osteobl	bone
19	chr1:85239000-85239600	Weak transcription	Pancreas	Pancrea
20	chr1:85239000-85240200	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:85239000-85241400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:85239200-85239600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:85239200-85244800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:85239400-85240600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:85239400-85240800	Weak transcription	Brain Germinal Matrix	brain

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