Variant report

Variant	rs55814741
Chromosome Location	chr8:119270549-119270550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119264517..119266750-chr8:119270051..119271645,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72675866	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv821660	chr8:119082062-119312183	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv831442	chr8:119181675-119390122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119208400-119292400	Weak transcription	Pancreas	Pancrea
2	chr8:119265200-119271000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:119266600-119275800	Weak transcription	Brain Angular Gyrus	brain
4	chr8:119267000-119277600	Weak transcription	Lung	lung
5	chr8:119268400-119271800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:119268400-119271800	Enhancers	NHDF-Ad	bronchial
7	chr8:119268600-119270600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:119268600-119270800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:119268600-119270800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:119268600-119271200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:119268800-119270800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:119268800-119271200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:119269000-119270600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:119269000-119270800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:119269000-119271200	Enhancers	Osteobl	bone
16	chr8:119269000-119271800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:119269200-119270600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:119269200-119270600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:119269200-119270600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:119269200-119270800	Enhancers	GM12878-XiMat	blood
21	chr8:119269200-119270800	Enhancers	NH-A	brain
22	chr8:119269400-119270600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:119269400-119270600	Enhancers	HSMM	muscle
24	chr8:119269600-119271200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:119269600-119271200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:119269600-119273800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr8:119269800-119271200	Enhancers	HUVEC	blood vessel
28	chr8:119270000-119276400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr8:119270200-119270800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:119270200-119270800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:119270200-119276000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:119270400-119271400	Weak transcription	Brain Substantia Nigra	brain
33	chr8:119270400-119272800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr8:119270400-119272800	Weak transcription	Aorta	Aorta
35	chr8:119270400-119273800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr8:119270400-119276000	Weak transcription	Left Ventricle	heart

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