Variant report

Variant	rs55817343
Chromosome Location	chr10:45441458-45441459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1109423	0.84[AFR][1000 genomes]
rs12414447	0.88[AFR][1000 genomes]
rs17515265	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17515286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34453249	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55951178	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076570	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083830	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7084511	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45431200-45453200	Weak transcription	Gastric	stomach
2	chr10:45438800-45441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:45439800-45441600	ZNF genes & repeats	GM12878-XiMat	blood
4	chr10:45440600-45442000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr10:45440800-45445800	Enhancers	Adipose Nuclei	Adipose
6	chr10:45441000-45446600	Enhancers	Fetal Muscle Leg	muscle
7	chr10:45441200-45441600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:45441200-45441600	Enhancers	Osteobl	bone
9	chr10:45441200-45442200	Enhancers	HSMMtube	muscle
10	chr10:45441200-45442400	Enhancers	Left Ventricle	heart
11	chr10:45441200-45443600	Enhancers	HepG2	liver
12	chr10:45441200-45443800	Enhancers	Psoas Muscle	Psoas
13	chr10:45441200-45447200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:45441400-45447600	Enhancers	Fetal Intestine Small	intestine
15	chr10:45441400-45449200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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