Variant report

Variant	rs558173539
Chromosome Location	chr4:62125212-62125213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62111400-62129400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:62116000-62127000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:62119800-62127400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:62120600-62126000	Weak transcription	Brain Substantia Nigra	brain
5	chr4:62120600-62126600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:62121000-62125400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62122000-62128200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:62122400-62126200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:62124400-62127000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:62124400-62127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:62124600-62129200	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links