Variant report

Variant	rs55818445
Chromosome Location	chr18:9647658-9647659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9643273..9646084-chr18:9646208..9649235,5	K562	blood:
2	chr18:9646205..9649195-chr18:9657550..9659547,2	K562	blood:
3	chr18:9647445..9649188-chr18:9652519..9654755,2	K562	blood:
4	chr18:9612489..9615116-chr18:9645929..9648400,4	MCF-7	breast:
5	chr18:9645776..9648945-chr18:9653255..9655530,3	K562	blood:

Variant related genes	Relation type
ENSG00000154845	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12957571	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12959303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12960645	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061136	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061137	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2061139	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4384658	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62080347	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv576449	chr18:9623052-9700382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9639000-9648000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:9639200-9663400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:9643400-9649400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr18:9643800-9649800	Weak transcription	Fetal Muscle Leg	muscle
5	chr18:9644400-9647800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr18:9644400-9648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr18:9644400-9649200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr18:9644400-9649800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:9644600-9647800	Weak transcription	HUVEC	blood vessel
10	chr18:9644800-9649400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr18:9645200-9649000	Weak transcription	NHDF-Ad	bronchial
12	chr18:9646200-9647800	Enhancers	NHEK	skin
13	chr18:9646400-9649000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr18:9646800-9649000	Enhancers	HepG2	liver
15	chr18:9646800-9649200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr18:9647000-9648200	Enhancers	Placenta	Placenta
17	chr18:9647200-9648800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr18:9647400-9647800	Enhancers	Esophagus	oesophagus
19	chr18:9647400-9648200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr18:9647400-9648400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr18:9647400-9648400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr18:9647400-9649600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr18:9647400-9649600	Enhancers	HMEC	breast
24	chr18:9647600-9647800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr18:9647600-9648000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr18:9647600-9648200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr18:9647600-9648200	Active TSS	Primary B cells from cord blood	blood
28	chr18:9647600-9648200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr18:9647600-9648200	Enhancers	Hela-S3	cervix
30	chr18:9647600-9648400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr18:9647600-9648400	Flanking Active TSS	A549	lung
32	chr18:9647600-9648400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr18:9647600-9648600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr18:9647600-9648800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr18:9647600-9649000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr18:9647600-9649000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr18:9647600-9649600	Enhancers	NH-A	brain
38	chr18:9647600-9650000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links