Variant report

Variant	rs558186471
Chromosome Location	chr15:59157952-59157953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:59156745-59158918	NB4	blood:	n/a	n/a
2	POLR2A	chr15:59156453-59158833	HepG2	liver:	n/a	n/a
3	CHD2	chr15:59156789-59158056	HepG2	liver:	n/a	n/a
4	TAF1	chr15:59157708-59158094	HepG2	liver:	n/a	n/a
5	EP300	chr15:59157763-59158070	HepG2	liver:	n/a	n/a
6	RPC155	chr15:59157933-59158663	Hela-S3	cervix:	n/a	n/a
7	BHLHE40	chr15:59156764-59157975	HepG2	liver:	n/a	n/a
8	MAX	chr15:59156384-59158233	HepG2	liver:	n/a	chr15:59157169-59157178
9	MXI1	chr15:59156672-59158015	HepG2	liver:	n/a	n/a
10	POLR2A	chr15:59157509-59158098	HepG2	liver:	n/a	n/a
11	POLR2A	chr15:59156646-59158082	HepG2	liver:	n/a	n/a
12	MAX	chr15:59156508-59158172	NB4	blood:	n/a	chr15:59157169-59157178
13	YY1	chr15:59157681-59158105	HepG2	liver:	n/a	n/a
14	TBP	chr15:59157694-59158104	HepG2	liver:	n/a	n/a
15	HEY1	chr15:59157531-59158131	HepG2	liver:	n/a	n/a
16	POLR2A	chr15:59156720-59158117	HepG2	liver:	n/a	n/a
17	POLR2A	chr15:59157677-59158066	HepG2	liver:	n/a	n/a
18	POLR2A	chr15:59156716-59158766	HepG2	liver:	n/a	n/a
19	ELF1	chr15:59157741-59158124	HepG2	liver:	n/a	n/a
20	MYC	chr15:59156638-59158881	NB4	blood:	n/a	chr15:59157169-59157178
21	USF2	chr15:59157901-59158024	HepG2	liver:	n/a	n/a
22	ELF1	chr15:59157725-59158130	HepG2	liver:	n/a	n/a
23	POLR2A	chr15:59156643-59158751	HepG2	liver:	n/a	n/a
24	MYC	chr15:59157844-59158077	HepG2	liver:	n/a	n/a
25	RCOR1	chr15:59157894-59158037	HepG2	liver:	n/a	n/a
26	POLR2A	chr15:59157629-59158133	HepG2	liver:	n/a	n/a
27	HEY1	chr15:59156646-59158153	HepG2	liver:	n/a	chr15:59157174-59157189
28	MAX	chr15:59156592-59158157	HepG2	liver:	n/a	chr15:59157169-59157178
29	POLR2A	chr15:59156652-59158138	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59141477..59144121-chr15:59157896..59159549,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259353	TF binding region
ENSG00000242747	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv977720	chr15:59157444-59165373	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59111800-59159600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:59120000-59169000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr15:59145000-59166600	Weak transcription	HSMMtube	muscle
4	chr15:59147200-59169000	Weak transcription	K562	blood
5	chr15:59147600-59174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:59148000-59168600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:59148000-59169000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:59151200-59165400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:59154600-59170200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:59156600-59158000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr15:59156600-59158200	Active TSS	Duodenum Mucosa	Duodenum
12	chr15:59156600-59158200	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr15:59156800-59158000	Active TSS	Colon Smooth Muscle	Colon
14	chr15:59156800-59158000	Enhancers	Lung	lung
15	chr15:59156800-59158000	Flanking Active TSS	Pancreas	Pancrea
16	chr15:59156800-59158400	Active TSS	Fetal Intestine Large	intestine
17	chr15:59156800-59158600	Active TSS	HepG2	liver
18	chr15:59157000-59158000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:59157000-59158000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr15:59157000-59158000	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr15:59157000-59158000	Active TSS	Rectal Smooth Muscle	rectum
22	chr15:59157000-59158000	Flanking Active TSS	Right Ventricle	heart
23	chr15:59157000-59158200	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr15:59157000-59158200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr15:59157200-59158000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:59157200-59158000	Active TSS	Liver	Liver
27	chr15:59157200-59158000	Active TSS	Brain Hippocampus Middle	brain
28	chr15:59157200-59158000	Flanking Active TSS	Gastric	stomach
29	chr15:59157200-59158200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:59157200-59158400	Active TSS	Fetal Intestine Small	intestine
31	chr15:59157200-59168600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:59157400-59158000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:59157400-59158000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
34	chr15:59157400-59158000	Flanking Active TSS	Placenta	Placenta
35	chr15:59157400-59158000	Flanking Active TSS	Fetal Thymus	thymus
36	chr15:59157400-59158000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr15:59157400-59158000	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr15:59157400-59158000	Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr15:59157400-59158000	Active TSS	Stomach Smooth Muscle	stomach
40	chr15:59157400-59158200	Active TSS	Colonic Mucosa	Colon
41	chr15:59157400-59168800	Weak transcription	Brain Angular Gyrus	brain
42	chr15:59157400-59170400	Weak transcription	Aorta	Aorta
43	chr15:59157600-59158000	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr15:59157600-59158000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
45	chr15:59157600-59158000	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr15:59157600-59158000	Flanking Active TSS	Stomach Mucosa	stomach
47	chr15:59157600-59158000	Active TSS	Thymus	Thymus
48	chr15:59157600-59158000	Flanking Active TSS	NHDF-Ad	bronchial
49	chr15:59157600-59158200	Flanking Active TSS	Fetal Stomach	stomach
50	chr15:59157600-59159600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links