Variant report

Variant	rs558199237
Chromosome Location	chr3:50712770-50712771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:50712677..50713421-chr3:50922505..50923533,3	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398465	chr3:50710948-50713996	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50711400-50714000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:50711400-50714400	Active TSS	Brain Angular Gyrus	brain
3	chr3:50711400-50714400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr3:50711600-50713800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr3:50711800-50713000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:50711800-50713000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:50711800-50713000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
8	chr3:50711800-50713000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:50711800-50713000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
10	chr3:50711800-50713000	Active TSS	HSMM	muscle
11	chr3:50711800-50713200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:50711800-50713200	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr3:50711800-50713200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:50711800-50713200	Bivalent/Poised TSS	A549	lung
15	chr3:50711800-50713400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:50711800-50714400	Active TSS	HSMMtube	muscle
17	chr3:50712000-50712800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:50712000-50712800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:50712000-50712800	Active TSS	Gastric	stomach
20	chr3:50712000-50712800	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
21	chr3:50712000-50712800	Bivalent/Poised TSS	NHEK	skin
22	chr3:50712000-50713000	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr3:50712000-50713000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:50712000-50713000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:50712000-50713000	Active TSS	Aorta	Aorta
26	chr3:50712000-50713000	Active TSS	Colon Smooth Muscle	Colon
27	chr3:50712000-50713000	Flanking Active TSS	Pancreas	Pancrea
28	chr3:50712000-50713200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:50712000-50713200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:50712000-50713200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
31	chr3:50712000-50713200	Flanking Bivalent TSS/Enh	Thymus	Thymus
32	chr3:50712000-50713400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr3:50712000-50713400	Active TSS	Fetal Brain Female	brain
34	chr3:50712000-50713600	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr3:50712000-50713600	Active TSS	Brain Substantia Nigra	brain
36	chr3:50712000-50713600	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr3:50712000-50713800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:50712000-50714000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr3:50712000-50714400	Active TSS	Brain Anterior Caudate	brain
40	chr3:50712200-50712800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:50712200-50712800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
42	chr3:50712200-50712800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr3:50712200-50712800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:50712200-50712800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:50712200-50712800	Active TSS	Adipose Nuclei	Adipose
46	chr3:50712200-50712800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
47	chr3:50712200-50712800	Bivalent/Poised TSS	HepG2	liver
48	chr3:50712200-50712800	Active TSS	K562	blood
49	chr3:50712200-50712800	Bivalent/Poised TSS	Osteobl	bone
50	chr3:50712200-50713000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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