Variant report

Variant	rs558202052
Chromosome Location	chr21:16588366-16588367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3454967	chr21:16586481-16591979	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1839906	chr21:16587118-16589135	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv587051	chr21:16587477-16589135	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv32772	chr21:16587490-16592163	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3454965	chr21:16587606-16591454	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3454968	chr21:16588025-16591737	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3454962	chr21:16588244-16591556	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv819831	chr21:16588272-16591913	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3454961	chr21:16588300-16591525	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3454966	chr21:16588309-16591546	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3454963	chr21:16588314-16591477	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3327555	chr21:16588340-16591472	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv820919	chr21:16588354-16590049	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv828822	chr21:16588354-16590049	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv828823	chr21:16588354-16591163	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv587052	chr21:16588359-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16585400-16592000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:16585600-16591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16586000-16591400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr21:16586400-16592400	Weak transcription	Liver	Liver
5	chr21:16587800-16588600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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