Variant report

Variant	rs558205179
Chromosome Location	chr3:141686628-141686629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr3:141686404-141686711	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141679111..141682072-chr3:141685599..141688176,2	K562	blood:

Variant related genes	Relation type
TFDP2	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3402943	chr3:141686262-141689235	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3342676	chr3:141686487-141689235	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:141666400-141687200	Strong transcription	Dnd41	blood
6	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:141669600-141696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:141671600-141697400	Weak transcription	Gastric	stomach
9	chr3:141671800-141691200	Weak transcription	Spleen	Spleen
10	chr3:141671800-141719000	Weak transcription	Placenta	Placenta
11	chr3:141671800-141724000	Weak transcription	Right Ventricle	heart
12	chr3:141671800-141735600	Weak transcription	Aorta	Aorta
13	chr3:141672000-141697000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:141672000-141700000	Weak transcription	Small Intestine	intestine
15	chr3:141672400-141688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:141674400-141688000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:141674400-141690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:141674400-141708000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:141674600-141700400	Weak transcription	Esophagus	oesophagus
20	chr3:141674600-141712600	Weak transcription	Fetal Brain Male	brain
21	chr3:141675400-141687000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:141675400-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:141675600-141687200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:141675600-141687200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:141675600-141687200	Strong transcription	Thymus	Thymus
26	chr3:141675800-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:141676000-141687000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:141676000-141687000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:141676000-141687000	Strong transcription	Fetal Thymus	thymus
30	chr3:141676200-141703800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:141676800-141688400	Weak transcription	Fetal Kidney	kidney
32	chr3:141677400-141696200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:141677800-141691200	Weak transcription	Brain Anterior Caudate	brain
34	chr3:141677800-141739000	Weak transcription	Left Ventricle	heart
35	chr3:141678200-141688600	Weak transcription	Primary B cells from cord blood	blood
36	chr3:141678600-141688600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr3:141678800-141745600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:141679400-141690600	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:141679600-141697000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr3:141679800-141691400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:141680000-141690600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:141680000-141697800	Weak transcription	NH-A	brain
43	chr3:141680000-141711200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr3:141680000-141731200	Weak transcription	Fetal Brain Female	brain
45	chr3:141680200-141697600	Weak transcription	Osteobl	bone
46	chr3:141680400-141697600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:141680600-141690000	Weak transcription	NHLF	lung
48	chr3:141680800-141691000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:141680800-141723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:141682000-141696600	Weak transcription	Brain Cingulate Gyrus	brain

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