The 2.0 version of rSNPBase

Variant report

Variant rs55821487
Chromosome Location chr17:45318549-45318550
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:45314200-45330200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:45316000-45321600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr17:45316200-45318600 Enhancers Fetal Muscle Leg muscle
4 chr17:45316400-45318600 Enhancers Fetal Heart heart
5 chr17:45316400-45318600 Enhancers Fetal Intestine Large intestine
6 chr17:45316600-45318600 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr17:45316600-45318600 Enhancers Fetal Adrenal Gland Adrenal Gland
8 chr17:45316600-45318600 Enhancers Fetal Intestine Small intestine
9 chr17:45316600-45318600 Enhancers Placenta Placenta
10 chr17:45316600-45318600 Enhancers Left Ventricle heart
11 chr17:45316600-45318600 Enhancers Psoas Muscle Psoas
12 chr17:45316600-45318600 Enhancers Right Atrium heart
13 chr17:45316600-45318600 Enhancers Skeletal Muscle Female skeletal muscle
14 chr17:45316600-45318600 Enhancers NH-A brain
15 chr17:45316600-45318800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr17:45316800-45318600 Enhancers Muscle Satellite Cultured Cells --
17 chr17:45316800-45318600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr17:45316800-45318600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
19 chr17:45316800-45318600 Enhancers Adipose Nuclei Adipose
20 chr17:45316800-45318600 Enhancers Aorta Aorta
21 chr17:45316800-45318600 Enhancers HMEC breast
22 chr17:45316800-45318600 Enhancers HSMM muscle
23 chr17:45316800-45318600 Enhancers HSMMtube muscle
24 chr17:45316800-45318600 Enhancers K562 blood
25 chr17:45316800-45318600 Enhancers NHDF-Ad bronchial
26 chr17:45316800-45318800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr17:45317000-45318600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr17:45317000-45318600 Enhancers Primary monocytes fromperipheralblood blood
29 chr17:45317000-45318600 Enhancers Lung lung
30 chr17:45317000-45318600 Enhancers Right Ventricle heart
31 chr17:45317200-45318600 Enhancers Spleen Spleen
32 chr17:45317600-45318600 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr17:45317600-45322800 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr17:45317800-45318600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
35 chr17:45317800-45318600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
36 chr17:45317800-45321000 Weak transcription Ovary ovary
37 chr17:45317800-45321800 Weak transcription Fetal Stomach stomach
38 chr17:45318000-45318600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr17:45318000-45318600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr17:45318000-45318600 Flanking Active TSS Hela-S3 cervix
41 chr17:45318000-45321800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr17:45318000-45322800 Weak transcription Small Intestine intestine
43 chr17:45318200-45318600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr17:45318200-45319000 Enhancers HUVEC blood vessel
45 chr17:45318200-45321000 Weak transcription Primary B cells from peripheral blood blood
46 chr17:45318200-45321600 Weak transcription Colon Smooth Muscle Colon
47 chr17:45318400-45318600 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr17:45318400-45318600 Enhancers Primary hematopoietic stem cells blood
49 chr17:45318400-45318600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
50 chr17:45318400-45318600 Enhancers Osteobl bone

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Last update: Aug 31, 2015