The 2.0 version of rSNPBase

Variant report

Variant rs55823053
Chromosome Location chr11:72590764-72590765
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:72540200-72616600 Strong transcription Primary B cells from peripheral blood blood
2 chr11:72543200-72614800 Weak transcription Psoas Muscle Psoas
3 chr11:72543400-72603000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr11:72550000-72600400 Weak transcription Pancreas Pancrea
5 chr11:72552400-72597400 Weak transcription HMEC breast
6 chr11:72554600-72595800 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr11:72554600-72596600 Weak transcription Fetal Brain Female brain
8 chr11:72555800-72595600 Weak transcription Thymus Thymus
9 chr11:72556800-72596600 Weak transcription Spleen Spleen
10 chr11:72557600-72595600 Weak transcription Lung lung
11 chr11:72567200-72612200 Weak transcription Small Intestine intestine
12 chr11:72574800-72590800 Strong transcription GM12878-XiMat blood
13 chr11:72575000-72599200 Weak transcription Hela-S3 cervix
14 chr11:72576000-72596400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr11:72576000-72596600 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr11:72576000-72596800 Weak transcription Ovary ovary
17 chr11:72576200-72596800 Weak transcription Brain Inferior Temporal Lobe brain
18 chr11:72576400-72596400 Weak transcription NHEK skin
19 chr11:72576800-72596400 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr11:72576800-72602400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr11:72577000-72596400 Weak transcription Stomach Smooth Muscle stomach
22 chr11:72577000-72596800 Weak transcription Rectal Smooth Muscle rectum
23 chr11:72577000-72597000 Weak transcription Brain Angular Gyrus brain
24 chr11:72577200-72596400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr11:72577200-72596400 Weak transcription Fetal Muscle Leg muscle
26 chr11:72577200-72596400 Weak transcription Right Ventricle heart
27 chr11:72577200-72596400 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr11:72577200-72596600 Weak transcription Adipose Nuclei Adipose
29 chr11:72577200-72651600 Weak transcription Gastric stomach
30 chr11:72577400-72596400 Weak transcription NHLF lung
31 chr11:72577400-72597000 Weak transcription Muscle Satellite Cultured Cells --
32 chr11:72577400-72599600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
33 chr11:72577600-72595600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr11:72577600-72596800 Weak transcription Aorta Aorta
35 chr11:72577600-72597000 Weak transcription Brain Germinal Matrix brain
36 chr11:72578400-72595800 Weak transcription Duodenum Mucosa Duodenum
37 chr11:72578400-72597600 Weak transcription NHDF-Ad bronchial
38 chr11:72578600-72596400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr11:72578800-72596600 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr11:72579000-72596000 Weak transcription Primary neutrophils fromperipheralblood blood
41 chr11:72579600-72595800 Weak transcription Primary T cells fromperipheralblood blood
42 chr11:72579600-72596000 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr11:72579600-72596400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr11:72579600-72596600 Weak transcription Left Ventricle heart
45 chr11:72579800-72596400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr11:72580400-72590800 Weak transcription Primary hematopoietic stem cells blood
47 chr11:72581200-72596400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr11:72581200-72596400 Weak transcription Primary T cells from cord blood blood
49 chr11:72581200-72597600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
50 chr11:72581200-72600600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015