Variant report

Variant	rs558242896
Chromosome Location	chr9:8340067-8340068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv2830193	chr9:8337939-8345923	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv523768	chr9:8339606-8342540	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8323400-8341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:8323800-8341600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:8324000-8345000	Weak transcription	Fetal Brain Male	brain
4	chr9:8330000-8348600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:8330200-8340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:8330200-8340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:8330200-8340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:8330200-8342200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:8330200-8364200	Weak transcription	Brain Anterior Caudate	brain
10	chr9:8331400-8342000	Weak transcription	Fetal Kidney	kidney
11	chr9:8336800-8341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:8337200-8340400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:8337400-8340200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:8337400-8340200	Strong transcription	Brain Cingulate Gyrus	brain
15	chr9:8337400-8340600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:8337400-8340800	Strong transcription	Fetal Brain Female	brain
17	chr9:8337400-8341800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:8337600-8340400	Strong transcription	Primary hematopoietic stem cells	blood
19	chr9:8338600-8342000	Weak transcription	Dnd41	blood
20	chr9:8338800-8348600	Weak transcription	Brain Angular Gyrus	brain
21	chr9:8339000-8340600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:8339200-8348000	Weak transcription	Brain Substantia Nigra	brain
23	chr9:8339400-8345600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:8339600-8341200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:8339600-8342600	Weak transcription	Fetal Lung	lung
26	chr9:8339600-8364400	Weak transcription	Brain Germinal Matrix	brain
27	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:8339800-8347400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:8340000-8340200	Enhancers	Ovary	ovary
30	chr9:8340000-8346000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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