Variant report

Variant	rs55825311
Chromosome Location	chr12:39831893-39831894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:39743968..39746775-chr12:39830107..39832162,2	K562	blood:
2	chr12:39815681..39818065-chr12:39831801..39835369,3	K562	blood:
3	chr12:39785456..39789344-chr12:39830749..39834519,3	K562	blood:
4	chr12:39707021..39709923-chr12:39830984..39833005,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11172527	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39806600-39834200	Weak transcription	Hela-S3	cervix
2	chr12:39813600-39833400	Weak transcription	Brain Germinal Matrix	brain
3	chr12:39814400-39833800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:39816000-39834000	Weak transcription	Left Ventricle	heart
5	chr12:39821400-39835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:39822200-39832200	Weak transcription	A549	lung
7	chr12:39822200-39833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:39824000-39832400	Weak transcription	HepG2	liver
9	chr12:39825200-39835600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:39825400-39834600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr12:39826000-39832200	Weak transcription	Liver	Liver
12	chr12:39828000-39832000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr12:39828000-39832800	Weak transcription	Fetal Brain Male	brain
14	chr12:39829600-39835800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:39829800-39834000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:39829800-39834000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:39829800-39834600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr12:39830000-39835400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:39830600-39833800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr12:39830600-39834800	Enhancers	Fetal Heart	heart
21	chr12:39831000-39832200	Enhancers	GM12878-XiMat	blood
22	chr12:39831000-39833800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr12:39831000-39833800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr12:39831200-39833000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr12:39831200-39833600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr12:39831400-39832200	Weak transcription	Fetal Brain Female	brain
27	chr12:39831400-39833600	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr12:39831600-39832000	Weak transcription	K562	blood
29	chr12:39831600-39834000	Weak transcription	NHEK	skin
30	chr12:39831600-39834400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr12:39831800-39833800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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