Variant report

Variant	rs55826943
Chromosome Location	chr14:104251918-104251919
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61350337	1.00[AMR][1000 genomes]
rs74088777	1.00[AMR][1000 genomes]
rs8006992	1.00[AMR][1000 genomes]
rs8012910	1.00[AMR][1000 genomes]
rs8014686	1.00[AMR][1000 genomes]
rs8014751	1.00[AMR][1000 genomes]
rs9324065	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv902313	chr14:104162263-104378087	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv9172	chr14:104248411-104252185	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104196000-104268000	Weak transcription	Small Intestine	intestine
2	chr14:104201000-104267600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:104203200-104267800	Weak transcription	Psoas Muscle	Psoas
4	chr14:104208800-104260000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:104209400-104264800	Weak transcription	Brain Substantia Nigra	brain
6	chr14:104211800-104265000	Weak transcription	Hela-S3	cervix
7	chr14:104215000-104256800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:104215400-104263800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:104215400-104273200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr14:104216000-104267600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:104216200-104259000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:104216200-104264400	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:104216200-104264600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:104216200-104267800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:104216200-104268800	Weak transcription	Brain Angular Gyrus	brain
16	chr14:104216600-104254800	Weak transcription	Brain Anterior Caudate	brain
17	chr14:104216600-104257200	Weak transcription	HepG2	liver
18	chr14:104216800-104261400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:104218400-104277800	Weak transcription	Spleen	Spleen
20	chr14:104218800-104270200	Weak transcription	Ovary	ovary
21	chr14:104223200-104254600	Weak transcription	HMEC	breast
22	chr14:104228600-104265000	Weak transcription	Fetal Kidney	kidney
23	chr14:104228800-104263200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:104228800-104270200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:104229200-104267800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:104230600-104271600	Weak transcription	Esophagus	oesophagus
27	chr14:104232000-104264000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr14:104234000-104263200	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:104236800-104272800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:104238800-104264400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:104238800-104270400	Weak transcription	HUVEC	blood vessel
32	chr14:104239000-104267600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:104239000-104272400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr14:104239200-104260600	Weak transcription	Primary B cells from cord blood	blood
35	chr14:104240800-104268000	Weak transcription	Fetal Heart	heart
36	chr14:104241000-104274400	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:104242400-104254400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:104242400-104260000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr14:104243000-104263400	Weak transcription	Primary T cells from cord blood	blood
40	chr14:104243600-104257000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:104244000-104256800	Weak transcription	Pancreas	Pancrea
42	chr14:104244000-104257000	Weak transcription	Gastric	stomach
43	chr14:104245200-104254400	Weak transcription	NHEK	skin
44	chr14:104245200-104271400	Weak transcription	Right Ventricle	heart
45	chr14:104245400-104263600	Weak transcription	Colonic Mucosa	Colon
46	chr14:104248200-104262000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr14:104248800-104260200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr14:104249200-104252800	Strong transcription	Fetal Intestine Small	intestine
49	chr14:104249400-104262000	Weak transcription	Aorta	Aorta
50	chr14:104249600-104267600	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links