Variant report

Variant	rs55827103
Chromosome Location	chr9:102783042-102783043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102580930..102583475-chr9:102781407..102783089,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13340720	1.00[AMR][1000 genomes]
rs55801872	1.00[AMR][1000 genomes]
rs56153123	1.00[AMR][1000 genomes]
rs73491407	1.00[AMR][1000 genomes]
rs73505752	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102757400-102790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:102760800-102783400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:102762000-102790000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:102763400-102783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:102764200-102783200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:102766400-102783400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:102766400-102784600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr9:102766400-102785400	Weak transcription	Fetal Brain Male	brain
10	chr9:102766400-102787000	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:102766400-102794800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:102766600-102787200	Weak transcription	Psoas Muscle	Psoas
13	chr9:102766800-102783400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:102766800-102784600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr9:102766800-102793000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:102767000-102783400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:102767000-102783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:102767000-102783400	Weak transcription	NHEK	skin
19	chr9:102767000-102785200	Weak transcription	Brain Substantia Nigra	brain
20	chr9:102767000-102785400	Weak transcription	Brain Germinal Matrix	brain
21	chr9:102767000-102787800	Weak transcription	Right Ventricle	heart
22	chr9:102767000-102799400	Weak transcription	Spleen	Spleen
23	chr9:102767000-102820400	Weak transcription	Colonic Mucosa	Colon
24	chr9:102767200-102784800	Weak transcription	A549	lung
25	chr9:102767200-102789800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:102767200-102821800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:102767600-102783400	Weak transcription	Lung	lung
28	chr9:102767600-102785800	Weak transcription	Pancreas	Pancrea
29	chr9:102767600-102788200	Weak transcription	Brain Angular Gyrus	brain
30	chr9:102767600-102790200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:102767600-102790400	Weak transcription	Brain Anterior Caudate	brain
32	chr9:102767600-102796000	Weak transcription	Gastric	stomach
33	chr9:102767600-102799400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:102767600-102800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
36	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
38	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:102771400-102816200	Weak transcription	NH-A	brain
40	chr9:102771800-102783400	Weak transcription	Fetal Intestine Small	intestine
41	chr9:102773600-102787000	Weak transcription	Fetal Brain Female	brain
42	chr9:102774000-102784800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr9:102774000-102787000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:102774000-102787600	Weak transcription	NHDF-Ad	bronchial
45	chr9:102774000-102787800	Weak transcription	NHLF	lung
46	chr9:102774000-102789600	Weak transcription	Hela-S3	cervix
47	chr9:102774000-102807400	Weak transcription	Fetal Kidney	kidney
48	chr9:102774200-102784000	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:102774600-102784000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:102775000-102784800	Strong transcription	Primary T cells from cord blood	blood

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