Variant report

Variant	rs558279945
Chromosome Location	chr3:59501024-59501025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv998676	chr3:59485915-59519363	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59499600-59503200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:59500200-59503800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:59500400-59501600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:59500600-59501200	Enhancers	Primary T cells from cord blood	blood
5	chr3:59500600-59501400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr3:59500600-59501600	Flanking Active TSS	Dnd41	blood
7	chr3:59500600-59501800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:59500600-59501800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:59500600-59502200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:59500800-59502000	Enhancers	Brain Hippocampus Middle	brain
11	chr3:59501000-59502000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:59501000-59502000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:59501000-59502000	Enhancers	Brain Substantia Nigra	brain
14	chr3:59501000-59502000	Enhancers	Fetal Brain Female	brain
15	chr3:59501000-59502200	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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