Variant report

Variant	rs55828312
Chromosome Location	chr8:42589602-42589603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10087172	0.83[ASN][1000 genomes]
rs10109429	0.83[ASN][1000 genomes]
rs10958725	0.84[EUR][1000 genomes]
rs10958727	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13254578	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13273442	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13277254	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13277524	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13280301	0.91[ASN][1000 genomes]
rs13280604	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1451239	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1451240	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1530847	0.91[ASN][1000 genomes]
rs16891561	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1901281	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1955185	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1955186	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1979140	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2196128	0.83[ASN][1000 genomes]
rs2217732	0.83[ASN][1000 genomes]
rs2304297	0.85[ASN][1000 genomes]
rs28501554	0.82[ASN][1000 genomes]
rs34456987	0.83[EUR][1000 genomes]
rs35599391	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36057318	0.89[ASN][1000 genomes]
rs4236926	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295650	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4392883	0.84[ASN][1000 genomes]
rs4736835	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4736836	0.81[EUR][1000 genomes]
rs4736838	0.87[EUR][1000 genomes]
rs4950	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57645595	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58379124	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6474411	0.84[EUR][1000 genomes]
rs6474412	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6474413	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6474414	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474415	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6982753	0.83[ASN][1000 genomes]
rs6985052	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6987704	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6990603	0.89[ASN][1000 genomes]
rs6997909	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7000412	0.85[ASN][1000 genomes]
rs7002223	0.85[ASN][1000 genomes]
rs7004108	0.85[ASN][1000 genomes]
rs7004381	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7017612	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7459838	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812298	0.85[ASN][1000 genomes]
rs7824155	0.85[ASN][1000 genomes]
rs7824614	0.85[ASN][1000 genomes]
rs7825907	0.83[ASN][1000 genomes]
rs7828366	0.85[ASN][1000 genomes]
rs7837296	0.89[ASN][1000 genomes]
rs7839964	0.82[ASN][1000 genomes]
rs7842601	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7845663	0.85[ASN][1000 genomes]
rs892413	0.85[ASN][1000 genomes]
rs9298628	0.85[ASN][1000 genomes]
rs9298629	0.85[ASN][1000 genomes]
rs9643853	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9643891	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9693825	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9693858	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9792257	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9792277	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1030451	chr8:42543326-42618390	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1034121	chr8:42549810-42618713	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv428516	chr8:42577171-42731235	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42586000-42591800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:42587600-42590800	Weak transcription	Pancreas	Pancrea
3	chr8:42588400-42592000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:42588600-42589800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:42588600-42594800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:42588600-42595400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:42588800-42591400	Weak transcription	Primary T cells from cord blood	blood
8	chr8:42588800-42591800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr8:42588800-42591800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:42589000-42591800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:42589200-42591800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr8:42589200-42592000	Weak transcription	Primary monocytes fromperipheralblood	blood

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