The 2.0 version of rSNPBase

Variant report

Variant rs558293460
Chromosome Location chr6:143540432-143540433
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143514200-143545400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr6:143514400-143545200 Weak transcription HMEC breast
3 chr6:143516000-143545600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr6:143525600-143544200 Weak transcription HepG2 liver
5 chr6:143525800-143545800 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr6:143527400-143552000 Weak transcription Brain Angular Gyrus brain
7 chr6:143527400-143578800 Weak transcription Brain Hippocampus Middle brain
8 chr6:143533800-143542000 Weak transcription Colon Smooth Muscle Colon
9 chr6:143535000-143540600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr6:143535000-143541000 Weak transcription H9 Cell Line embryonic stem cell
11 chr6:143535000-143541000 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr6:143535000-143541000 Weak transcription Fetal Intestine Small intestine
13 chr6:143535000-143541600 Weak transcription H1 Cell Line embryonic stem cell
14 chr6:143535000-143541600 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr6:143535000-143544200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr6:143535000-143544200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr6:143535000-143545200 Weak transcription Pancreas Pancrea
18 chr6:143535000-143549600 Weak transcription Lung lung
19 chr6:143535000-143551000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr6:143535000-143568000 Weak transcription Aorta Aorta
21 chr6:143536000-143543000 Weak transcription Ovary ovary
22 chr6:143536000-143543000 Weak transcription Right Atrium heart
23 chr6:143536200-143546000 Weak transcription Right Ventricle heart
24 chr6:143536600-143542800 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr6:143537000-143543000 Weak transcription Fetal Muscle Leg muscle
26 chr6:143537600-143542000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr6:143537600-143542800 Weak transcription Fetal Lung lung
28 chr6:143537800-143542000 Weak transcription Rectal Smooth Muscle rectum
29 chr6:143537800-143542400 Weak transcription Stomach Smooth Muscle stomach
30 chr6:143537800-143547200 Strong transcription K562 blood
31 chr6:143538000-143542400 Weak transcription Fetal Stomach stomach
32 chr6:143538000-143542400 Weak transcription Psoas Muscle Psoas
33 chr6:143538000-143542600 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr6:143539000-143543200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr6:143539400-143542000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr6:143539800-143542800 Enhancers Fetal Heart heart
37 chr6:143540200-143540800 Weak transcription Liver Liver
38 chr6:143540200-143542800 Weak transcription Adipose Nuclei Adipose
39 chr6:143540400-143541400 Enhancers Left Ventricle heart
40 chr6:143540400-143542200 Strong transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015