Variant report

Variant	rs558298368
Chromosome Location	chr4:79257093-79257094
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv829978	chr4:79144453-79291868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv4399	chr4:79251832-79284571	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv524023	chr4:79256273-79257710	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases
8	esv14891	chr4:79256788-79263029	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79221200-79263000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:79229800-79257600	Weak transcription	Fetal Stomach	stomach
3	chr4:79230200-79268600	Weak transcription	Pancreas	Pancrea
4	chr4:79230600-79258000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:79231600-79260400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:79238000-79263200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:79240400-79263000	Weak transcription	Psoas Muscle	Psoas
8	chr4:79241600-79257600	Weak transcription	Left Ventricle	heart
9	chr4:79247400-79257400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:79247400-79257600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:79250400-79257600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:79253200-79257600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:79253200-79257800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:79253400-79257600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:79253400-79257800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:79253400-79258600	Weak transcription	Placenta	Placenta
17	chr4:79253800-79257600	Weak transcription	Fetal Lung	lung
18	chr4:79253800-79264800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr4:79254600-79257600	Weak transcription	Right Atrium	heart
20	chr4:79254600-79257800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:79254600-79257800	Weak transcription	NHDF-Ad	bronchial
22	chr4:79254600-79258400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:79254600-79261600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:79254800-79257400	Weak transcription	Fetal Intestine Large	intestine
25	chr4:79254800-79257600	Weak transcription	Fetal Kidney	kidney
26	chr4:79255000-79257400	Weak transcription	Fetal Intestine Small	intestine
27	chr4:79255600-79257800	Weak transcription	Right Ventricle	heart
28	chr4:79255800-79259000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:79256200-79257200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:79256400-79258200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:79256400-79258400	Enhancers	H9 Cell Line	embryonic stem cell
32	chr4:79256400-79258400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr4:79256400-79259600	Enhancers	Fetal Heart	heart
34	chr4:79256400-79265200	Strong transcription	HepG2	liver
35	chr4:79256600-79257400	Weak transcription	HSMMtube	muscle
36	chr4:79256600-79258000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr4:79256600-79258200	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr4:79256600-79258400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr4:79256600-79261800	Weak transcription	Aorta	Aorta
40	chr4:79256800-79257400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr4:79256800-79257400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr4:79256800-79257600	Weak transcription	Brain Germinal Matrix	brain
43	chr4:79256800-79257800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr4:79256800-79258400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr4:79257000-79258200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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