Variant report

Variant	rs55829878
Chromosome Location	chr3:138945181-138945182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73231700	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005167	chr3:138854490-138988546	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536728	chr3:138854490-138988546	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138941400-138946200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:138941800-138950600	Weak transcription	K562	blood
3	chr3:138943400-138948200	Enhancers	Ovary	ovary
4	chr3:138944000-138947600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:138944200-138946200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:138944200-138947000	Enhancers	Pancreas	Pancrea
7	chr3:138944400-138947000	Enhancers	Left Ventricle	heart
8	chr3:138944600-138945800	Weak transcription	NH-A	brain
9	chr3:138944800-138948800	Weak transcription	NHDF-Ad	bronchial
10	chr3:138945000-138945600	Weak transcription	Right Ventricle	heart
11	chr3:138945000-138946000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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