Variant report

Variant	rs558312898
Chromosome Location	chr6:4898961-4898962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4894595..4897390-chr6:4897999..4900907,2	MCF-7	breast:
2	chr6:4849119..4850755-chr6:4898473..4900044,2	MCF-7	breast:
3	chr6:4897821..4901952-chr6:4908622..4912007,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv970734	chr6:4898790-4906391	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4878200-4905200	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:4879600-4906200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:4880400-4907800	Weak transcription	Small Intestine	intestine
4	chr6:4882800-4909000	Weak transcription	Brain Anterior Caudate	brain
5	chr6:4884800-4903800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:4885000-4908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:4887200-4901400	Weak transcription	HSMMtube	muscle
8	chr6:4888000-4906400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:4889200-4906400	Weak transcription	NHLF	lung
10	chr6:4890200-4901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:4890600-4913800	Weak transcription	Hela-S3	cervix
12	chr6:4890800-4900600	Weak transcription	NH-A	brain
13	chr6:4891200-4899000	Weak transcription	Brain Germinal Matrix	brain
14	chr6:4891200-4905600	Weak transcription	Fetal Kidney	kidney
15	chr6:4891200-4907400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:4891400-4899200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:4891400-4900400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:4891400-4906400	Weak transcription	Fetal Heart	heart
19	chr6:4891600-4899000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:4891600-4899000	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr6:4892000-4899000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr6:4892800-4906400	Weak transcription	HUVEC	blood vessel
23	chr6:4892800-4906600	Weak transcription	Osteobl	bone
24	chr6:4893000-4899400	Weak transcription	Brain Substantia Nigra	brain
25	chr6:4893200-4912600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr6:4893400-4903400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:4893400-4903400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:4893400-4906600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:4893400-4906600	Weak transcription	Thymus	Thymus
30	chr6:4893400-4909000	Weak transcription	Brain Angular Gyrus	brain
31	chr6:4893600-4901200	Weak transcription	Pancreas	Pancrea
32	chr6:4893600-4905000	Weak transcription	Colonic Mucosa	Colon
33	chr6:4893600-4910200	Weak transcription	Esophagus	oesophagus
34	chr6:4893600-4914000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:4894600-4904000	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:4894600-4905600	Weak transcription	Right Ventricle	heart
37	chr6:4894800-4901200	Weak transcription	Liver	Liver
38	chr6:4894800-4906600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:4895000-4917000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:4895200-4899000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:4895200-4901800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:4895200-4909000	Weak transcription	Adipose Nuclei	Adipose
43	chr6:4895600-4899800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:4895800-4899600	Strong transcription	GM12878-XiMat	blood
45	chr6:4896000-4906600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:4896400-4899200	Strong transcription	HepG2	liver
47	chr6:4896400-4903400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:4896600-4899600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:4896600-4900000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:4896600-4900400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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