Variant report

Variant	rs55832021
Chromosome Location	chr14:33096892-33096893
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33081326..33083127-chr14:33096469..33099467,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73260906	1.00[AMR][1000 genomes]
rs73264807	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33072200-33103600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:33078800-33097000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:33078800-33098200	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:33078800-33102600	Weak transcription	Aorta	Aorta
5	chr14:33080000-33104200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:33089600-33102600	Weak transcription	Psoas Muscle	Psoas
7	chr14:33092400-33102800	Weak transcription	Right Ventricle	heart
8	chr14:33093200-33098200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:33093200-33098200	Weak transcription	Brain Substantia Nigra	brain
10	chr14:33093200-33102800	Weak transcription	Left Ventricle	heart
11	chr14:33093200-33103600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:33093200-33104200	Weak transcription	HSMM	muscle
13	chr14:33093400-33097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:33093800-33104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:33094000-33102400	Weak transcription	NHDF-Ad	bronchial
16	chr14:33094400-33098200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:33096200-33098000	Enhancers	Fetal Heart	heart
18	chr14:33096200-33102800	Weak transcription	HSMMtube	muscle
19	chr14:33096600-33097200	Enhancers	Fetal Intestine Large	intestine
20	chr14:33096600-33097400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:33096600-33098000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr14:33096800-33097000	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:33096800-33097200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr14:33096800-33097200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr14:33096800-33097200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr14:33096800-33097400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:33096800-33097400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr14:33096800-33097400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr14:33096800-33097600	Enhancers	Dnd41	blood
30	chr14:33096800-33098800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:33096800-33102400	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:33096800-33105400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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