Variant report

Variant	rs558328161
Chromosome Location	chr6:166998922-166998923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	esv3522272	chr6:166998312-167001210	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2580547	chr6:166998381-167000738	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3522269	chr6:166998589-167000640	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2182887	chr6:166998779-167000380	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3474374	chr6:166998856-167000273	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv969468	chr6:166998864-166999985	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3522267	chr6:166998886-167000246	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3522270	chr6:166998903-167000274	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3474371	chr6:166998912-167000239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3474373	chr6:166998920-167000242	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166981800-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:166986200-167002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:166986600-167001400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:166986800-167003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:166987000-167002000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:166987200-167001800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:166989000-167011400	Weak transcription	Ovary	ovary
8	chr6:166989600-167001800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:166990600-167001800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:166992400-167000200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:166992400-167000400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:166993600-167003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:166993800-167001800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:166994000-167003600	Weak transcription	Brain Germinal Matrix	brain
15	chr6:166994800-167002000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:166995000-167008400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:166995600-167000200	Weak transcription	Brain Angular Gyrus	brain
18	chr6:166995600-167002400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:166995800-167000400	Weak transcription	Spleen	Spleen
20	chr6:166995800-167001200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:166995800-167001600	Weak transcription	Gastric	stomach
22	chr6:166995800-167002200	Weak transcription	Right Ventricle	heart
23	chr6:166996600-166999000	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:166996600-166999000	Enhancers	Osteobl	bone
25	chr6:166996800-166999000	Enhancers	Fetal Heart	heart
26	chr6:166996800-167000600	Weak transcription	Stomach Mucosa	stomach
27	chr6:166996800-167001400	Weak transcription	Brain Anterior Caudate	brain
28	chr6:166997000-167000400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:166997000-167000600	Weak transcription	Fetal Kidney	kidney
30	chr6:166997000-167002200	Weak transcription	Pancreas	Pancrea
31	chr6:166997000-167003000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:166997200-167002000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:166997200-167002200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr6:166997200-167003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:166997200-167006000	Weak transcription	Aorta	Aorta
36	chr6:166997400-167003000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:166997600-167002200	Weak transcription	HMEC	breast
38	chr6:166997800-167000400	Weak transcription	Primary B cells from cord blood	blood
39	chr6:166997800-167001200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:166997800-167001600	Weak transcription	Lung	lung
41	chr6:166998000-167000000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:166998000-167000400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:166998000-167000400	Weak transcription	Fetal Intestine Small	intestine
44	chr6:166998000-167000600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:166998000-167000800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:166998000-167011200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:166998200-167002200	Weak transcription	Left Ventricle	heart
48	chr6:166998600-166999000	Flanking Active TSS	NHDF-Ad	bronchial
49	chr6:166998600-167000200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:166998600-167000200	Weak transcription	Brain Substantia Nigra	brain

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