Variant report

Variant	rs55832820
Chromosome Location	chr10:28467350-28467351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72801842	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28449800-28497000	Weak transcription	Fetal Intestine Small	intestine
2	chr10:28461400-28469600	Weak transcription	Fetal Heart	heart
3	chr10:28461600-28467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:28466600-28468000	Active TSS	Stomach Smooth Muscle	stomach
5	chr10:28466800-28467400	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr10:28466800-28467400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:28466800-28467400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:28466800-28467600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr10:28466800-28467600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:28466800-28467800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:28466800-28468200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr10:28466800-28468400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr10:28466800-28468400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr10:28467000-28467400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr10:28467000-28467400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:28467000-28467400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr10:28467000-28467400	Active TSS	Adipose Nuclei	Adipose
18	chr10:28467000-28467400	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr10:28467000-28467400	Enhancers	Fetal Thymus	thymus
20	chr10:28467000-28467400	Enhancers	Left Ventricle	heart
21	chr10:28467000-28467400	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr10:28467000-28467400	Flanking Active TSS	HMEC	breast
23	chr10:28467000-28467600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr10:28467000-28467600	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:28467000-28467600	Active TSS	Brain Hippocampus Middle	brain
26	chr10:28467000-28467600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr10:28467000-28467600	Enhancers	Psoas Muscle	Psoas
28	chr10:28467000-28467600	Enhancers	GM12878-XiMat	blood
29	chr10:28467000-28467600	Active TSS	HSMM	muscle
30	chr10:28467000-28467600	Flanking Active TSS	NHDF-Ad	bronchial
31	chr10:28467000-28467800	Flanking Active TSS	Liver	Liver
32	chr10:28467000-28467800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr10:28467000-28467800	Active TSS	Right Atrium	heart
34	chr10:28467000-28467800	Flanking Active TSS	Hela-S3	cervix
35	chr10:28467000-28467800	Flanking Active TSS	HUVEC	blood vessel
36	chr10:28467000-28467800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr10:28467000-28468000	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr10:28467000-28468200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:28467000-28468200	Enhancers	Primary B cells from peripheral blood	blood
40	chr10:28467000-28468200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:28467000-28468200	Enhancers	Brain Substantia Nigra	brain
42	chr10:28467000-28468200	Enhancers	Stomach Mucosa	stomach
43	chr10:28467200-28467400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:28467200-28467400	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr10:28467200-28467400	Active TSS	Muscle Satellite Cultured Cells	--
46	chr10:28467200-28467400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:28467200-28467400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:28467200-28467400	Enhancers	Small Intestine	intestine
49	chr10:28467200-28467400	Active TSS	NHEK	skin
50	chr10:28467200-28467600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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