Variant report

Variant	rs558331546
Chromosome Location	chr7:65446395-65446396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr7:65445674-65446547	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:65446336-65446557	Hela-S3	cervix:	n/a	n/a
3	MXI1	chr7:65445412-65448047	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr7:65446235-65446435	HepG2	liver:	n/a	n/a
5	HEY1	chr7:65445110-65446531	K562	blood:	n/a	n/a
6	ZNF384	chr7:65445985-65446638	K562	blood:	n/a	n/a
7	NR2F2	chr7:65445404-65447918	K562	blood:	n/a	n/a
8	HCFC1	chr7:65446253-65447869	Hela-S3	cervix:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:65337864..65339398-chr7:65445758..65448693,2	K562	blood:
2	chr7:65431377..65432977-chr7:65445764..65448122,2	K562	blood:
3	chr7:65438802..65441733-chr7:65444240..65447107,3	MCF-7	breast:
4	chr7:65445709..65448649-chr7:65579782..65581390,2	K562	blood:

No data

Variant related genes	Relation type
GUSB	TF binding region
ENSG00000169919	Chromatin interaction
ENSG00000196715	Chromatin interaction
ENSG00000241258	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1020337	chr7:65371505-65449654	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv1025494	chr7:65402301-65515606	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538906	chr7:65402301-65515606	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv888321	chr7:65408904-65449541	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv9823	chr7:65413362-65468020	Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv3426468	chr7:65413488-65462982	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	esv3433491	chr7:65414034-65463477	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1028971	chr7:65414064-65457437	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	nsv888322	chr7:65415647-65466565	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv538907	chr7:65417400-65456089	Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv888323	chr7:65418355-65461080	ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
14	nsv888324	chr7:65418876-65466565	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
15	nsv967489	chr7:65445874-65469129	Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65444400-65446400	Weak transcription	Aorta	Aorta
2	chr7:65445200-65446600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr7:65445400-65446400	Flanking Active TSS	Liver	Liver
4	chr7:65445400-65446400	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr7:65445400-65446400	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr7:65445400-65446400	Flanking Active TSS	HepG2	liver
7	chr7:65445400-65446600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr7:65445400-65446600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr7:65445400-65446600	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr7:65445400-65446800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr7:65445400-65446800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr7:65445400-65446800	Enhancers	Fetal Heart	heart
13	chr7:65445400-65447600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr7:65445600-65446400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:65445600-65446400	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr7:65445600-65446400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr7:65445600-65446400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr7:65445600-65446400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr7:65445600-65446400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr7:65445600-65446400	Flanking Active TSS	Brain Substantia Nigra	brain
21	chr7:65445600-65446400	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr7:65445600-65446400	Enhancers	Small Intestine	intestine
23	chr7:65445600-65446400	Flanking Active TSS	Stomach Mucosa	stomach
24	chr7:65445600-65446600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:65445600-65446600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:65445600-65446600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:65445600-65446600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:65445600-65446600	Flanking Active TSS	Fetal Thymus	thymus
29	chr7:65445600-65446800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr7:65445600-65446800	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr7:65445600-65447400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:65445600-65447600	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr7:65445600-65447800	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr7:65445600-65447800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
35	chr7:65445600-65447800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:65445800-65446400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:65445800-65446400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr7:65445800-65446400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr7:65445800-65446400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:65445800-65446400	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr7:65445800-65446400	Flanking Active TSS	NH-A	brain
42	chr7:65445800-65446600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:65445800-65446600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr7:65445800-65446600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr7:65445800-65446800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr7:65445800-65446800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr7:65445800-65446800	Enhancers	Spleen	Spleen
48	chr7:65445800-65447400	Active TSS	Colonic Mucosa	Colon
49	chr7:65445800-65447600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:65445800-65447600	Active TSS	HUES64 Cell Line	embryonic stem cell

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