Variant report

Variant	rs558334395
Chromosome Location	chr11:102176165-102176166
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:102176121-102176472	A549	lung:	n/a	n/a
2	POLR2A	chr11:102175943-102177774	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr11:102175716-102178596	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102175561..102178536-chr11:102186960..102189576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270868	TF binding region
ENSG00000023445	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv975125	chr11:102175161-102176624	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102170000-102176600	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr11:102171600-102176200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:102173200-102182400	Weak transcription	Gastric	stomach
4	chr11:102173600-102176600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:102173600-102183800	Weak transcription	Lung	lung
6	chr11:102173800-102176400	Weak transcription	Thymus	Thymus
7	chr11:102174200-102176800	Enhancers	Primary B cells from cord blood	blood
8	chr11:102174400-102176400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:102174400-102177000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:102174400-102178400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr11:102174400-102178400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr11:102174600-102176600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:102174800-102176400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr11:102174800-102176400	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:102174800-102176600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:102174800-102177400	Enhancers	Primary T cells from cord blood	blood
17	chr11:102174800-102178400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:102174800-102179600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:102175000-102176600	Weak transcription	Spleen	Spleen
20	chr11:102175200-102179800	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:102175400-102176400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:102175400-102176400	Enhancers	Hela-S3	cervix
23	chr11:102175400-102176600	Enhancers	HMEC	breast
24	chr11:102175400-102177000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:102175400-102178400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:102175400-102178400	Enhancers	Fetal Thymus	thymus
27	chr11:102175600-102176400	Enhancers	NHEK	skin
28	chr11:102175600-102178200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr11:102175600-102178800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:102175800-102176800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:102175800-102176800	Weak transcription	Small Intestine	intestine
32	chr11:102176000-102176400	Enhancers	A549	lung
33	chr11:102176000-102176400	Enhancers	Dnd41	blood
34	chr11:102176000-102176600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:102176000-102176800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr11:102176000-102177800	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr11:102176000-102178000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:102176000-102178000	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:102176000-102178400	Enhancers	Stomach Mucosa	stomach

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