Variant report

Variant rs558334415
Chromosome Location chr6:109760617-109760618
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:109725800-109760800 Weak transcription Brain Anterior Caudate brain
2 chr6:109736600-109760800 Weak transcription Brain Angular Gyrus brain
3 chr6:109745600-109760800 Weak transcription Gastric stomach
4 chr6:109750800-109760800 Weak transcription Brain Substantia Nigra brain
5 chr6:109751000-109760800 Weak transcription Right Atrium heart
6 chr6:109751200-109761400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr6:109751400-109760800 Weak transcription Fetal Stomach stomach
8 chr6:109753800-109760800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr6:109754000-109760800 Weak transcription Pancreas Pancrea
10 chr6:109756000-109760800 Weak transcription Spleen Spleen
11 chr6:109756800-109761400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr6:109758600-109760800 Weak transcription Primary hematopoietic stem cells blood
13 chr6:109758600-109760800 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr6:109759200-109760800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr6:109760200-109760800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr6:109760200-109760800 Active TSS Hela-S3 cervix
17 chr6:109760200-109761600 Flanking Active TSS Muscle Satellite Cultured Cells --
18 chr6:109760200-109763200 Active TSS A549 lung
19 chr6:109760400-109760800 Active TSS Fetal Kidney kidney
20 chr6:109760400-109760800 Enhancers Fetal Muscle Trunk muscle
21 chr6:109760400-109760800 Enhancers Fetal Muscle Leg muscle
22 chr6:109760400-109760800 Enhancers K562 blood
23 chr6:109760400-109761000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr6:109760400-109761600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr6:109760400-109762400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
26 chr6:109760400-109762400 Active TSS Duodenum Mucosa Duodenum
27 chr6:109760400-109762600 Active TSS Ovary ovary
28 chr6:109760400-109762600 Active TSS Rectal Smooth Muscle rectum
29 chr6:109760400-109762800 Active TSS Fetal Intestine Small intestine
30 chr6:109760400-109763400 Active TSS Pancreatic Islets Pancreatic Islet
31 chr6:109760600-109760800 Bivalent Enhancer H1 Cell Line embryonic stem cell
32 chr6:109760600-109760800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr6:109760600-109760800 Active TSS Breast Myoepithelial Primary Cells Breast
34 chr6:109760600-109760800 Enhancers Primary T helper cells PMA-I stimulated --
35 chr6:109760600-109760800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr6:109760600-109760800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr6:109760600-109760800 Enhancers Cortex derived primary cultured neurospheres brain
38 chr6:109760600-109760800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr6:109760600-109760800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr6:109760600-109760800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
41 chr6:109760600-109760800 Enhancers Fetal Brain Male brain
42 chr6:109760600-109760800 Enhancers Fetal Lung lung
43 chr6:109760600-109760800 Active TSS Rectal Mucosa Donor 31 rectum
44 chr6:109760600-109760800 Enhancers Skeletal Muscle Male skeletal muscle
45 chr6:109760600-109760800 Enhancers Skeletal Muscle Female skeletal muscle
46 chr6:109760600-109760800 Weak transcription Stomach Mucosa stomach
47 chr6:109760600-109760800 Enhancers HMEC breast
48 chr6:109760600-109760800 Enhancers NHDF-Ad bronchial
49 chr6:109760600-109761000 Enhancers Primary B cells from cord blood blood
50 chr6:109760600-109761000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin

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