Variant report

Variant	rs55833717
Chromosome Location	chr15:78401002-78401003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78251353..78252448-chr15:78400281..78401311,8	MCF-7	breast:
2	chr15:78292050..78293044-chr15:78400416..78401371,3	K562	blood:
3	chr15:78400336..78401442-chr15:78532932..78533726,4	MCF-7	breast:
4	chr15:78293404..78294385-chr15:78400442..78401273,2	MCF-7	breast:
5	chr15:78291946..78293315-chr15:78400365..78401521,34	MCF-7	breast:
6	chr15:78292095..78293104-chr15:78399979..78401592,9	MCF-7	breast:
7	chr15:78258802..78259810-chr15:78400203..78401702,8	MCF-7	breast:
8	chr15:78367037..78369598-chr15:78400476..78402359,2	MCF-7	breast:
9	chr15:78194874..78195656-chr15:78400670..78401266,2	MCF-7	breast:
10	chr15:78400766..78401305-chr15:78487699..78488656,2	MCF-7	breast:
11	chr15:78251437..78252368-chr15:78400780..78401344,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000167202	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11856417	0.86[ASN][1000 genomes]
rs16953973	0.98[ASN][1000 genomes]
rs3784326	0.97[ASN][1000 genomes]
rs55921592	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031028	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv274890	chr15:78396447-78402258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78393200-78406000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78393400-78401200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:78395000-78405600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:78395400-78405600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:78396000-78405400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:78396200-78405600	Weak transcription	Brain Anterior Caudate	brain
7	chr15:78396200-78421800	Weak transcription	Right Ventricle	heart
8	chr15:78396400-78404000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:78396400-78405400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:78396600-78405400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:78396600-78405600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:78396600-78423800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:78396800-78401400	Strong transcription	Fetal Stomach	stomach
14	chr15:78397000-78405600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:78397600-78401200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:78397600-78421400	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:78398400-78405400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:78398400-78405600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:78398400-78423200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:78398600-78405200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:78398600-78405600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:78398600-78413200	Weak transcription	Spleen	Spleen
23	chr15:78398800-78406200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:78399000-78402000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:78399000-78405400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:78399600-78401200	Enhancers	Placenta	Placenta
27	chr15:78400000-78412800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:78400000-78422400	Weak transcription	Brain Germinal Matrix	brain
29	chr15:78400200-78414600	Weak transcription	Fetal Brain Female	brain
30	chr15:78400600-78401200	Genic enhancers	Fetal Intestine Large	intestine
31	chr15:78400600-78401200	Genic enhancers	Fetal Intestine Small	intestine
32	chr15:78400600-78401200	Genic enhancers	Fetal Thymus	thymus
33	chr15:78400600-78401200	Enhancers	Stomach Mucosa	stomach
34	chr15:78400800-78401200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr15:78400800-78401400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:78400800-78405200	Weak transcription	Osteobl	bone
37	chr15:78400800-78405400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:78400800-78405600	Weak transcription	HepG2	liver
39	chr15:78401000-78403800	Strong transcription	Thymus	Thymus

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