Variant report

Variant	rs55833824
Chromosome Location	chr1:47785145-47785146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11211509	0.83[AMR][1000 genomes]
rs12092248	0.83[AMR][1000 genomes]
rs12239246	0.83[AMR][1000 genomes]
rs13374419	0.83[AMR][1000 genomes]
rs13376465	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103087	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55830339	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59216068	0.83[AMR][1000 genomes]
rs6656779	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6660505	0.83[AMR][1000 genomes]
rs6702191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74074243	0.86[AFR][1000 genomes]
rs7512955	0.83[AMR][1000 genomes]
rs7555179	0.83[AMR][1000 genomes]
rs9988633	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390574	chr1:47778981-47803091	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47780200-47798400	Weak transcription	Spleen	Spleen
2	chr1:47780600-47798000	Weak transcription	HSMMtube	muscle
3	chr1:47780800-47789200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:47780800-47791200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:47780800-47797800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:47783200-47785400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:47783800-47787800	Weak transcription	HepG2	liver
8	chr1:47785000-47786000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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