Variant report

Variant	rs558342410
Chromosome Location	chr11:119346596-119346597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119338931..119342259-chr11:119346107..119349803,3	K562	blood:
2	chr11:119252341..119254091-chr11:119344729..119346901,2	K562	blood:
3	chr11:119191259..119193835-chr11:119343897..119346665,2	K562	blood:
4	chr11:119344891..119347210-chr11:119349502..119351029,2	MCF-7	breast:
5	chr11:119187492..119189176-chr11:119345752..119348208,2	K562	blood:
6	chr11:119341330..119343728-chr11:119345375..119347336,2	MCF-7	breast:
7	chr11:119227301..119229062-chr11:119346080..119347995,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832284	chr11:119237650-119408625	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1054222	chr11:119295063-119406369	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1831688	chr11:119346590-119387267	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119337800-119359600	Weak transcription	Right Atrium	heart
2	chr11:119345200-119346600	Enhancers	HSMMtube	muscle
3	chr11:119345200-119346800	Enhancers	NHDF-Ad	bronchial
4	chr11:119345400-119346600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:119345400-119347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:119345600-119346600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:119345600-119346600	Enhancers	K562	blood
8	chr11:119345600-119346600	Enhancers	Osteobl	bone
9	chr11:119345600-119346800	Enhancers	NHLF	lung
10	chr11:119346000-119346600	Enhancers	HSMM	muscle
11	chr11:119346000-119347600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:119346400-119346800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:119346400-119347200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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