Variant report

Variant	rs55834268
Chromosome Location	chr7:101274117-101274118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:101273916-101274214	MCF10A-Er-Src	breast:	n/a	chr7:101274087-101274097 chr7:101274038-101274048
2	FOS	chr7:101273939-101274358	MCF10A-Er-Src	breast:	n/a	chr7:101274086-101274095 chr7:101274120-101274131 chr7:101274270-101274279
3	RAD21	chr7:101273962-101274240	SK-N-SH_RA	brain:	n/a	n/a
4	STAT3	chr7:101273951-101274253	MCF10A-Er-Src	breast:	n/a	chr7:101273961-101273969 chr7:101274193-101274201
5	FOSL2	chr7:101273805-101274952	SK-N-SH	brain:	n/a	chr7:101274564-101274574 chr7:101274086-101274095 chr7:101274270-101274279 chr7:101274725-101274737 chr7:101274564-101274574 chr7:101274563-101274575 chr7:101274565-101274573
6	STAT3	chr7:101273978-101274123	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr7:101273943-101274287	MCF10A-Er-Src	breast:	n/a	chr7:101274086-101274095 chr7:101274120-101274131 chr7:101274270-101274279
8	REST	chr7:101273811-101274328	MCF-7	breast:	n/a	chr7:101273899-101273912 chr7:101274021-101274034
9	FOS	chr7:101273938-101274839	MCF10A-Er-Src	breast:	n/a	chr7:101274564-101274574 chr7:101274086-101274095 chr7:101274120-101274131 chr7:101274270-101274279 chr7:101274725-101274737 chr7:101274564-101274574 chr7:101274563-101274575 chr7:101274565-101274573
10	MYC	chr7:101273929-101274205	MCF10A-Er-Src	breast:	n/a	chr7:101274087-101274097 chr7:101274038-101274048
11	FOS	chr7:101273847-101274936	HUVEC	blood vessel:	n/a	chr7:101274564-101274574 chr7:101274086-101274095 chr7:101274120-101274131 chr7:101274270-101274279 chr7:101274725-101274737 chr7:101274564-101274574 chr7:101274563-101274575 chr7:101274565-101274573
12	POLR2A	chr7:101274020-101274124	HUVEC	blood vessel:	n/a	n/a
13	POLR2A	chr7:101273873-101274251	HUVEC	blood vessel:	n/a	n/a
14	FOS	chr7:101273966-101274298	MCF10A-Er-Src	breast:	n/a	chr7:101274086-101274095 chr7:101274120-101274131 chr7:101274270-101274279
15	FOSL2	chr7:101273965-101274336	SK-N-SH	brain:	n/a	chr7:101274086-101274095 chr7:101274270-101274279
16	POLR2A	chr7:101273751-101274272	HUVEC	blood vessel:	n/a	n/a
17	STAT3	chr7:101274018-101274217	MCF10A-Er-Src	breast:	n/a	chr7:101274193-101274201

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101272795..101275451-chr7:101277536..101279709,2	MCF-7	breast:
2	chr7:101265195..101267380-chr7:101272779..101275035,3	MCF-7	breast:

Variant related genes	Relation type
MYL10	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11762174	1.00[ASN][1000 genomes]
rs11769066	1.00[ASN][1000 genomes]
rs11772885	1.00[ASN][1000 genomes]
rs11978556	1.00[ASN][1000 genomes]
rs17135736	1.00[ASN][1000 genomes]
rs55649670	1.00[ASN][1000 genomes]
rs62466311	1.00[ASN][1000 genomes]
rs6959058	1.00[ASN][1000 genomes]
rs6964984	1.00[ASN][1000 genomes]
rs6965121	1.00[ASN][1000 genomes]
rs73173966	1.00[ASN][1000 genomes]
rs73176038	1.00[ASN][1000 genomes]
rs7801832	1.00[ASN][1000 genomes]
rs7808279	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv888821	chr7:101091470-101311540	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv888822	chr7:101105017-101330734	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv888824	chr7:101109073-101330734	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv888825	chr7:101168283-101330734	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv888826	chr7:101230768-101277334	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101258400-101274400	Weak transcription	Right Atrium	heart
2	chr7:101269400-101275000	Enhancers	Placenta	Placenta
3	chr7:101270000-101276800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:101270000-101279600	Enhancers	Fetal Muscle Leg	muscle
5	chr7:101272000-101275200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:101272000-101279600	Enhancers	Fetal Muscle Trunk	muscle
7	chr7:101273200-101274200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:101273400-101275200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr7:101273400-101275200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:101273400-101275200	Enhancers	HUVEC	blood vessel
11	chr7:101273400-101275400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:101273400-101275400	Enhancers	HMEC	breast
13	chr7:101273600-101274200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr7:101273600-101274200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:101273600-101274200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:101273600-101274400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr7:101273600-101274600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:101273600-101274800	Enhancers	Fetal Thymus	thymus
19	chr7:101273600-101275200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:101273600-101275200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:101273600-101275200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:101273600-101275200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr7:101273600-101275200	Enhancers	HSMM	muscle
24	chr7:101273600-101275200	Enhancers	NH-A	brain
25	chr7:101273800-101274200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:101273800-101274200	Weak transcription	Psoas Muscle	Psoas
27	chr7:101273800-101274200	Enhancers	NHEK	skin
28	chr7:101273800-101274600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:101273800-101274600	Enhancers	Gastric	stomach
30	chr7:101273800-101274800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:101273800-101274800	Enhancers	Spleen	Spleen
32	chr7:101273800-101275000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:101273800-101275000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr7:101273800-101275000	Enhancers	HSMMtube	muscle
35	chr7:101273800-101275200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:101273800-101275200	Enhancers	Esophagus	oesophagus
37	chr7:101273800-101280200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:101274000-101274400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:101274000-101274400	Bivalent Enhancer	HepG2	liver
40	chr7:101274000-101275000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:101274000-101275000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:101274000-101275000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links