Variant report

Variant	rs558351659
Chromosome Location	chr5:36690086-36690087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36666970..36669597-chr5:36688949..36691021,2	MCF-7	breast:
2	chr5:36679517..36682118-chr5:36687238..36691565,3	MCF-7	breast:
3	chr5:36670007..36672138-chr5:36689642..36692155,2	K562	blood:
4	chr5:36414601..36415558-chr5:36689948..36691438,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079215	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv969921	chr5:36645147-36696229	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv880571	chr5:36675699-36710205	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv528986	chr5:36689363-36692112	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36671400-36690200	Weak transcription	Pancreas	Pancrea
2	chr5:36678000-36690200	Weak transcription	Lung	lung
3	chr5:36679000-36690200	Weak transcription	Gastric	stomach
4	chr5:36680000-36690200	Weak transcription	Hela-S3	cervix
5	chr5:36682200-36690200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:36684200-36693200	Weak transcription	Spleen	Spleen
7	chr5:36685200-36690200	Weak transcription	HSMMtube	muscle
8	chr5:36688800-36690200	Enhancers	Fetal Heart	heart
9	chr5:36689200-36690200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:36689200-36690200	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:36689200-36690200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:36689400-36690200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:36689400-36691000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:36689600-36690200	Weak transcription	Esophagus	oesophagus
15	chr5:36689600-36690600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:36689600-36690800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:36689800-36690200	Enhancers	Liver	Liver
18	chr5:36689800-36690200	Flanking Active TSS	Brain Substantia Nigra	brain
19	chr5:36689800-36690600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:36690000-36690200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:36690000-36690200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr5:36690000-36690200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr5:36690000-36690200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr5:36690000-36690200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
25	chr5:36690000-36690200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:36690000-36690200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:36690000-36690200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr5:36690000-36690200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr5:36690000-36690200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
30	chr5:36690000-36690200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr5:36690000-36690200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr5:36690000-36690200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:36690000-36690200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:36690000-36690200	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr5:36690000-36690200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr5:36690000-36690200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr5:36690000-36690200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:36690000-36690200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:36690000-36690200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:36690000-36690200	Flanking Active TSS	Brain Angular Gyrus	brain
41	chr5:36690000-36690200	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr5:36690000-36690200	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr5:36690000-36690200	Enhancers	Colonic Mucosa	Colon
44	chr5:36690000-36690200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr5:36690000-36690200	Flanking Active TSS	Fetal Brain Male	brain
46	chr5:36690000-36690200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr5:36690000-36690200	Flanking Active TSS	Fetal Lung	lung
48	chr5:36690000-36690200	Flanking Active TSS	Placenta	Placenta
49	chr5:36690000-36690200	Active TSS	Left Ventricle	heart
50	chr5:36690000-36690200	Active TSS	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links