Variant report

Variant	rs558354490
Chromosome Location	chr3:194826933-194826934
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:194649753..194650272-chr3:194826865..194827380,2	K562	blood:
2	chr3:194822394..194825195-chr3:194825824..194828590,3	K562	blood:
3	chr3:194405402..194408792-chr3:194825129..194828912,5	MCF-7	breast:
4	chr3:194755717..194756712-chr3:194826887..194827939,8	MCF-7	breast:
5	chr3:194750351..194753020-chr3:194825090..194827323,3	MCF-7	breast:
6	chr3:194590210..194593182-chr3:194824418..194827220,2	MCF-7	breast:
7	chr3:194722310..194723268-chr3:194826858..194827831,7	MCF-7	breast:
8	chr3:194750132..194752795-chr3:194825393..194827376,2	MCF-7	breast:
9	chr3:194721395..194723219-chr3:194825772..194828111,2	MCF-7	breast:
10	chr3:194825282..194827537-chr3:194865128..194866939,2	K562	blood:
11	chr3:194725498..194726699-chr3:194826761..194827799,4	MCF-7	breast:
12	chr3:194722742..194723422-chr3:194826877..194827390,2	MCF-7	breast:
13	chr3:194392238..194392827-chr3:194826810..194827674,3	MCF-7	breast:
14	chr3:194403076..194403838-chr3:194826818..194828013,5	MCF-7	breast:
15	chr3:194818492..194820858-chr3:194824605..194827345,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185112	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007697	chr3:194554814-195009930	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536873	chr3:194554814-195009930	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv997779	chr3:194687093-194885936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv536874	chr3:194687093-194885936	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1009796	chr3:194737333-195124248	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	esv1813153	chr3:194754532-194851746	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878136	chr3:194779412-194845226	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1012592	chr3:194814446-194931562	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
9	nsv536875	chr3:194814446-194931562	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1001492	chr3:194814990-194935397	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
11	nsv461126	chr3:194817484-194961888	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
12	nsv592981	chr3:194817484-194961888	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
13	nsv878137	chr3:194822098-194900432	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
14	nsv963494	chr3:194826599-194833987	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:194808600-194827000	Weak transcription	Fetal Brain Female	brain
2	chr3:194814600-194827800	Enhancers	Fetal Heart	heart
3	chr3:194815400-194827000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:194815800-194827000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:194815800-194830200	Weak transcription	Primary T cells from cord blood	blood
6	chr3:194816000-194830000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:194816400-194827000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:194817200-194831200	Weak transcription	Gastric	stomach
9	chr3:194818200-194828800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:194820800-194827600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:194821200-194827800	Enhancers	HUVEC	blood vessel
12	chr3:194822000-194827000	Weak transcription	Pancreas	Pancrea
13	chr3:194822000-194827000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:194822000-194846600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:194822200-194827000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:194822400-194827000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:194822600-194827000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:194822600-194827000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:194823200-194827800	Enhancers	Fetal Intestine Large	intestine
20	chr3:194823400-194827000	Enhancers	Placenta	Placenta
21	chr3:194823600-194827000	Weak transcription	GM12878-XiMat	blood
22	chr3:194823600-194831200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:194823800-194833200	Weak transcription	HSMM	muscle
24	chr3:194824000-194827000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:194824000-194827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:194824000-194827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:194824000-194827000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:194824000-194827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:194824000-194827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:194824000-194827000	Weak transcription	Ovary	ovary
31	chr3:194824000-194827400	Weak transcription	NHEK	skin
32	chr3:194824000-194831000	Weak transcription	HSMMtube	muscle
33	chr3:194824000-194838800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:194824200-194827000	Weak transcription	Colonic Mucosa	Colon
35	chr3:194824200-194827000	Weak transcription	Esophagus	oesophagus
36	chr3:194824200-194827000	Weak transcription	Left Ventricle	heart
37	chr3:194824200-194827000	Weak transcription	Psoas Muscle	Psoas
38	chr3:194824200-194827000	Weak transcription	Right Atrium	heart
39	chr3:194824200-194827000	Weak transcription	Right Ventricle	heart
40	chr3:194824200-194827000	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:194824200-194827000	Weak transcription	HMEC	breast
42	chr3:194824200-194827000	Weak transcription	K562	blood
43	chr3:194824200-194827000	Weak transcription	NH-A	brain
44	chr3:194824400-194827000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:194824400-194827600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr3:194824600-194827000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr3:194824600-194827000	Weak transcription	Adipose Nuclei	Adipose
48	chr3:194824600-194827000	Weak transcription	NHLF	lung
49	chr3:194824600-194827800	Enhancers	Fetal Thymus	thymus
50	chr3:194824800-194827000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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