Variant report

Variant	rs55836009
Chromosome Location	chr2:190378732-190378733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73978672	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190375600-190380600	Weak transcription	Stomach Mucosa	stomach
2	chr2:190376000-190386000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:190376400-190382000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:190376600-190384800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:190376800-190379000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:190377000-190378800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:190377400-190383000	Weak transcription	Fetal Lung	lung
8	chr2:190377800-190379600	Weak transcription	Aorta	Aorta
9	chr2:190378000-190379200	Enhancers	Ovary	ovary
10	chr2:190378200-190385800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:190378400-190380200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr2:190378400-190382000	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr2:190378600-190379600	Weak transcription	Adipose Nuclei	Adipose
14	chr2:190378600-190379800	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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