Variant report

Variant	rs558368573
Chromosome Location	chr10:44757129-44757130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-2	chr10:44756965-44757261	XLOC_008794

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3495951	chr10:44757085-44761391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3496062	chr10:44757120-44761379	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44749000-44757600	Enhancers	HepG2	liver
2	chr10:44753000-44757800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:44754600-44758400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:44755200-44757800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:44755400-44758200	Enhancers	Fetal Heart	heart
6	chr10:44755800-44757800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr10:44755800-44758400	Enhancers	Right Ventricle	heart
8	chr10:44756000-44757400	Bivalent Enhancer	Fetal Stomach	stomach
9	chr10:44756000-44758400	Enhancers	Spleen	Spleen
10	chr10:44756000-44759200	Enhancers	NHDF-Ad	bronchial
11	chr10:44756000-44761000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:44756200-44757800	Enhancers	Placenta	Placenta
13	chr10:44756200-44757800	Enhancers	Left Ventricle	heart
14	chr10:44756200-44760800	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:44756400-44757200	Weak transcription	Lung	lung
16	chr10:44756400-44757800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:44756400-44758000	Enhancers	Fetal Muscle Leg	muscle
18	chr10:44756400-44760200	Enhancers	Colon Smooth Muscle	Colon
19	chr10:44756600-44757200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:44756600-44757600	Enhancers	Esophagus	oesophagus
21	chr10:44756600-44757800	Enhancers	Colonic Mucosa	Colon
22	chr10:44756600-44758000	Enhancers	Right Atrium	heart
23	chr10:44756600-44758200	Enhancers	Ovary	ovary
24	chr10:44756600-44759200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr10:44756600-44760200	Enhancers	Adipose Nuclei	Adipose
26	chr10:44756800-44757400	Enhancers	Osteobl	bone
27	chr10:44756800-44757600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr10:44756800-44757800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:44756800-44759800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:44757000-44757200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:44757000-44757200	Flanking Active TSS	GM12878-XiMat	blood
32	chr10:44757000-44757400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr10:44757000-44757400	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr10:44757000-44757600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:44757000-44757800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:44757000-44757800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:44757000-44757800	Enhancers	Fetal Intestine Small	intestine
38	chr10:44757000-44758000	Enhancers	NHLF	lung
39	chr10:44757000-44758200	Enhancers	Pancreas	Pancrea
40	chr10:44757000-44758400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:44757000-44758400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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