Variant report

Variant	rs55837465
Chromosome Location	chr10:23342538-23342539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:23341017..23343445-chr10:23382753..23384991,2	K562	blood:
2	chr10:23311558..23313154-chr10:23341132..23342839,2	K562	blood:
3	chr10:22781985..22783738-chr10:23342270..23345158,2	K562	blood:
4	chr10:23303236..23310250-chr10:23341340..23346193,13	K562	blood:
5	chr10:23276792..23280787-chr10:23340649..23346324,8	K562	blood:
6	chr10:22839689..22842283-chr10:23342301..23346033,4	K562	blood:
7	chr10:22844152..22847369-chr10:23341363..23344619,3	K562	blood:
8	chr10:22999547..23001399-chr10:23341048..23342925,2	K562	blood:
9	chr10:23342240..23344463-chr10:23363258..23365955,2	K562	blood:
10	chr10:23293163..23294906-chr10:23341702..23344445,2	K562	blood:
11	chr10:22492352..22494784-chr10:23342363..23343927,2	K562	blood:
12	chr10:21817965..21819754-chr10:23342312..23345868,3	K562	blood:
13	chr10:21931269..21933741-chr10:23341520..23343153,2	K562	blood:
14	chr10:22544996..22546669-chr10:23341658..23344214,2	K562	blood:
15	chr10:22544744..22546398-chr10:23341973..23344722,2	MCF-7	breast:
16	chr10:23286320..23291300-chr10:23340827..23345371,11	K562	blood:
17	chr10:22999547..23001404-chr10:23340712..23342548,2	K562	blood:
18	chr10:22612338..22615061-chr10:23342386..23344383,3	K562	blood:
19	chr10:23301145..23302883-chr10:23341346..23344238,2	K562	blood:
20	chr10:23341115..23345773-chr10:23377859..23381987,5	K562	blood:
21	chr10:23302995..23309769-chr10:23341340..23346193,8	K562	blood:
22	chr10:23103158..23106579-chr10:23341900..23344132,3	K562	blood:
23	chr10:23235549..23238851-chr10:23341862..23344743,3	K562	blood:
24	chr10:21814581..21817361-chr10:23341974..23344611,3	K562	blood:
25	chr10:22298312..22301292-chr10:23342361..23345861,3	K562	blood:
26	chr10:23276691..23280787-chr10:23341219..23344727,5	K562	blood:
27	chr10:23284388..23291311-chr10:23340827..23345972,11	K562	blood:
28	chr10:22997562..22999322-chr10:23342370..23344992,2	K562	blood:
29	chr10:22970714..22972337-chr10:23340303..23342897,2	K562	blood:
30	chr10:23272365..23274882-chr10:23341922..23344202,2	K562	blood:
31	chr10:23335001..23336603-chr10:23340488..23342583,2	MCF-7	breast:
32	chr10:23297640..23302791-chr10:23338306..23344811,10	K562	blood:
33	chr10:23282511..23285269-chr10:23340360..23342664,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction
ENSG00000148450	Chromatin interaction
ENSG00000221221	Chromatin interaction
ENSG00000180592	Chromatin interaction
ENSG00000223131	Chromatin interaction

rs_ID	r²[population]
rs58334381	1.00[AMR][1000 genomes]
rs74121717	1.00[AMR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23336600-23348800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:23339600-23344800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:23340000-23343400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:23340200-23343000	Enhancers	Placenta	Placenta
5	chr10:23340400-23343000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:23340600-23342600	Enhancers	Hela-S3	cervix
7	chr10:23340600-23343000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:23340600-23345800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:23340800-23342600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:23341000-23342600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:23341000-23342600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:23341000-23342600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:23341200-23344000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:23341400-23342600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:23341400-23342600	Enhancers	NHEK	skin
16	chr10:23341600-23342800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:23341600-23343200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:23341600-23343200	Enhancers	HSMMtube	muscle
19	chr10:23341800-23342600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:23341800-23342800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:23341800-23345400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr10:23342200-23342600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:23342200-23343200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:23342200-23344000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:23342200-23348600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:23342400-23343000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:23342400-23343800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:23342400-23344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:23342400-23344000	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:23342400-23344200	Weak transcription	Fetal Kidney	kidney
31	chr10:23342400-23344800	Enhancers	K562	blood
32	chr10:23342400-23350000	Weak transcription	Stomach Mucosa	stomach

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