Variant report

Variant	rs55838092
Chromosome Location	chr5:35619083-35619084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35618439..35620989-chr5:35639383..35642500,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11951251	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11960006	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12654422	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12656037	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12657378	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12657936	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1508650	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1508651	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1508652	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1508653	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4623125	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4703419	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60285353	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62353010	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7720593	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35616800-35619400	Flanking Active TSS	Dnd41	blood
2	chr5:35617400-35619200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:35617600-35619200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:35618200-35619400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:35618400-35619200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:35618400-35619200	Flanking Active TSS	Osteobl	bone
7	chr5:35618600-35619200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:35618600-35619200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:35618600-35619200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr5:35618600-35619200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr5:35618600-35619200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:35618600-35619200	Enhancers	Fetal Heart	heart
13	chr5:35618600-35619200	Flanking Active TSS	Fetal Intestine Small	intestine
14	chr5:35618600-35619200	Flanking Active TSS	Fetal Lung	lung
15	chr5:35618600-35619200	Enhancers	Fetal Thymus	thymus
16	chr5:35618600-35619200	Active TSS	Stomach Smooth Muscle	stomach
17	chr5:35618600-35619200	Flanking Active TSS	HSMMtube	muscle
18	chr5:35618600-35619400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:35618600-35620000	Weak transcription	Gastric	stomach
20	chr5:35618600-35622000	Weak transcription	Esophagus	oesophagus
21	chr5:35618600-35633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:35618600-35646800	Weak transcription	Spleen	Spleen
23	chr5:35618600-35653800	Weak transcription	Lung	lung
24	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
25	chr5:35618800-35619200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:35618800-35619200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:35618800-35619200	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr5:35618800-35619200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:35618800-35619200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:35618800-35619200	Enhancers	Adipose Nuclei	Adipose
31	chr5:35618800-35619200	Enhancers	Liver	Liver
32	chr5:35618800-35619200	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr5:35618800-35619200	Enhancers	Fetal Muscle Leg	muscle
34	chr5:35618800-35619200	Enhancers	Fetal Stomach	stomach
35	chr5:35618800-35619200	Enhancers	Pancreas	Pancrea
36	chr5:35618800-35619200	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr5:35618800-35619200	Flanking Active TSS	A549	lung
38	chr5:35618800-35619200	Enhancers	HepG2	liver
39	chr5:35618800-35619200	Enhancers	HSMM	muscle
40	chr5:35618800-35619200	Flanking Active TSS	NHDF-Ad	bronchial
41	chr5:35618800-35619200	Flanking Active TSS	NHLF	lung
42	chr5:35618800-35619400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr5:35618800-35619400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr5:35618800-35625800	Weak transcription	Aorta	Aorta
45	chr5:35618800-35628600	Weak transcription	Ovary	ovary
46	chr5:35619000-35619200	Enhancers	Primary hematopoietic stem cells	blood
47	chr5:35619000-35619200	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr5:35619000-35619200	Enhancers	Brain Angular Gyrus	brain
49	chr5:35619000-35619200	Enhancers	Brain Cingulate Gyrus	brain
50	chr5:35619000-35619200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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