Variant report

Variant	rs558383146
Chromosome Location	chr4:106710364-106710365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv436449	chr4:106706856-106717563	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3465892	chr4:106707173-106717240	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3465891	chr4:106707198-106717201	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3465890	chr4:106707206-106717231	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3465893	chr4:106707256-106717168	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3465894	chr4:106707256-106717168	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv13123	chr4:106708350-106717147	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3692832	chr4:106709583-106716527	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv441904	chr4:106710092-106717094	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv514237	chr4:106710207-106716663	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106692400-106729400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:106694000-106718200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:106695200-106757000	Weak transcription	Primary B cells from cord blood	blood
4	chr4:106697200-106725800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:106697800-106723200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:106698000-106725200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:106698200-106719200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:106703200-106755600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:106705600-106713400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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