Variant report

Variant	rs55841205
Chromosome Location	chr5:178395142-178395143
allele	-/CA/CACA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017941	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537974	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv883219	chr5:178390237-178454118	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv883220	chr5:178394717-178454118	ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
2	chr5:178384400-178395600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:178388800-178397000	ZNF genes & repeats	Brain Anterior Caudate	brain
4	chr5:178388800-178398600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr5:178389000-178398200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr5:178389200-178398400	ZNF genes & repeats	Liver	Liver
7	chr5:178389400-178400400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr5:178389400-178405200	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr5:178389600-178396200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
10	chr5:178389800-178398400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr5:178389800-178399600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:178389800-178400000	ZNF genes & repeats	Fetal Stomach	stomach
13	chr5:178391400-178396000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr5:178393600-178396800	ZNF genes & repeats	Pancreas	Pancrea
15	chr5:178394400-178395400	Weak transcription	Fetal Heart	heart
16	chr5:178394800-178398400	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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