Variant report

Variant	rs558422953
Chromosome Location	chr15:43677833-43677834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43663286..43666933-chr15:43675071..43678230,5	K562	blood:
2	chr15:43663323..43666198-chr15:43675979..43677850,2	K562	blood:
3	chr15:43675492..43679390-chr15:43681135..43683414,3	K562	blood:

Variant related genes	Relation type
ENSG00000137822	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv3449979	chr15:43677710-43679708	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43664000-43692600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:43664200-43678000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:43664600-43687800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:43664600-43688000	Weak transcription	Stomach Mucosa	stomach
5	chr15:43664600-43695600	Weak transcription	Fetal Heart	heart
6	chr15:43665000-43687800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:43665000-43730000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:43665200-43686600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:43667400-43681600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:43667600-43681600	Strong transcription	Hela-S3	cervix
11	chr15:43668000-43717800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:43668200-43680400	Strong transcription	Fetal Stomach	stomach
13	chr15:43668200-43680600	Strong transcription	Fetal Muscle Leg	muscle
14	chr15:43668200-43680800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:43668200-43681400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr15:43668200-43681800	Strong transcription	Dnd41	blood
17	chr15:43668200-43683800	Strong transcription	Liver	Liver
18	chr15:43668200-43702200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:43668200-43732800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:43668400-43679600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr15:43668400-43680600	Strong transcription	Fetal Muscle Trunk	muscle
22	chr15:43668400-43680800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr15:43668400-43683800	Strong transcription	Primary T cells from cord blood	blood
24	chr15:43668600-43679600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:43668600-43680800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:43668600-43680800	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr15:43668600-43681200	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:43668600-43681400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr15:43668600-43681400	Strong transcription	Fetal Thymus	thymus
30	chr15:43668600-43681600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:43668600-43681800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:43668600-43681800	Strong transcription	HepG2	liver
33	chr15:43668600-43682000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:43668600-43682000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:43668600-43682000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:43668800-43678800	Strong transcription	Primary B cells from cord blood	blood
37	chr15:43668800-43679200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:43668800-43680400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:43668800-43680800	Strong transcription	Adipose Nuclei	Adipose
40	chr15:43668800-43681200	Strong transcription	Fetal Intestine Large	intestine
41	chr15:43668800-43681400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr15:43668800-43681400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr15:43668800-43681400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr15:43668800-43681600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:43669000-43680600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:43669000-43681400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr15:43669200-43681000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr15:43669200-43681400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:43670600-43703200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:43670800-43678600	Strong transcription	Thymus	Thymus

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