Variant report

Variant	rs55843101
Chromosome Location	chr7:107890379-107890380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107874811..107876975-chr7:107889006..107891244,2	K562	blood:
2	chr7:107889555..107891760-chr7:107925759..107927489,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12670135	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1269645	0.81[ASN][1000 genomes]
rs1269649	0.80[ASN][1000 genomes]
rs17155335	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2284284	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3819747	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6970096	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs926146	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107884800-107890600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:107886000-107891200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr7:107887200-107890600	Weak transcription	Right Atrium	heart
4	chr7:107887200-107891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:107887400-107892000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:107887400-107892000	Weak transcription	Pancreas	Pancrea
7	chr7:107887400-107893800	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:107887400-107894000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:107887600-107890600	Weak transcription	Esophagus	oesophagus
11	chr7:107887800-107894000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:107888000-107906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:107888400-107892000	Weak transcription	HSMMtube	muscle
14	chr7:107888400-107892200	Weak transcription	HSMM	muscle
15	chr7:107888600-107892000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:107888600-107892000	Weak transcription	K562	blood
17	chr7:107888800-107890600	Enhancers	Fetal Kidney	kidney
18	chr7:107889000-107890800	Enhancers	HepG2	liver
19	chr7:107889400-107890600	Enhancers	Fetal Intestine Large	intestine
20	chr7:107889400-107892000	Weak transcription	Brain Angular Gyrus	brain
21	chr7:107889400-107893800	Weak transcription	HMEC	breast
22	chr7:107889400-107894200	Weak transcription	Osteobl	bone
23	chr7:107889600-107892000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:107889800-107890400	Flanking Active TSS	A549	lung
25	chr7:107889800-107892000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:107889800-107892000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:107889800-107892000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:107889800-107892200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:107890000-107890400	Weak transcription	Brain Anterior Caudate	brain
30	chr7:107890000-107892000	Weak transcription	Brain Hippocampus Middle	brain
31	chr7:107890000-107892200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:107890200-107890600	Enhancers	Fetal Intestine Small	intestine
33	chr7:107890200-107892000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr7:107890200-107892000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:107890200-107892000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links