Variant report

Variant	rs558440182
Chromosome Location	chr3:160796292-160796293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160796262..160798451-chr3:160804894..160807595,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NMD3-1	chr3:160792441-160796690	NONHSAT093004

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv3450411	chr3:160796072-160796412	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160780800-160821400	Weak transcription	Fetal Brain Male	brain
2	chr3:160781400-160803400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:160781800-160798200	Weak transcription	Fetal Stomach	stomach
4	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
5	chr3:160782000-160799800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:160784200-160799000	Weak transcription	Ovary	ovary
7	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
8	chr3:160787200-160818800	Weak transcription	Brain Germinal Matrix	brain
9	chr3:160787600-160803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:160788000-160799600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:160788000-160799600	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:160788000-160802800	Weak transcription	Fetal Kidney	kidney
13	chr3:160788200-160803400	Weak transcription	Fetal Brain Female	brain
14	chr3:160788600-160803400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:160788600-160807600	Weak transcription	Pancreas	Pancrea
16	chr3:160788800-160799400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:160788800-160803400	Weak transcription	Adipose Nuclei	Adipose
18	chr3:160789200-160799600	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:160789200-160803200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:160789600-160818800	Weak transcription	Esophagus	oesophagus
21	chr3:160789800-160798400	Weak transcription	Left Ventricle	heart
22	chr3:160789800-160802600	Weak transcription	Osteobl	bone
23	chr3:160790000-160798400	Weak transcription	Right Atrium	heart
24	chr3:160792800-160803200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:160794800-160800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:160795400-160798800	Weak transcription	Right Ventricle	heart
27	chr3:160796000-160796400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:160796000-160799400	Weak transcription	GM12878-XiMat	blood
29	chr3:160796000-160817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:160796200-160799400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:160796200-160821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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