Variant report

Variant	rs558449480
Chromosome Location	chr11:72599560-72599561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72581827..72584521-chr11:72598729..72600782,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv975362	chr11:72598491-72611417	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
3	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:72550000-72600400	Weak transcription	Pancreas	Pancrea
5	chr11:72567200-72612200	Weak transcription	Small Intestine	intestine
6	chr11:72576800-72602400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:72577200-72651600	Weak transcription	Gastric	stomach
8	chr11:72577400-72599600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:72581200-72600600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:72581200-72602800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:72581200-72609000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:72581400-72600400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:72581800-72619600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:72582600-72622000	Weak transcription	Fetal Heart	heart
15	chr11:72582800-72605800	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:72586200-72601000	Weak transcription	Fetal Brain Male	brain
17	chr11:72587200-72602200	Weak transcription	Esophagus	oesophagus
18	chr11:72591400-72601400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:72592800-72601200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:72593200-72601600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:72593200-72615000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:72593200-72616200	Strong transcription	Primary B cells from cord blood	blood
23	chr11:72593400-72601400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:72593600-72601200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:72594000-72601400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:72594000-72601400	Strong transcription	Dnd41	blood
27	chr11:72594000-72602800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:72594200-72619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:72594400-72602200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:72594600-72600800	Strong transcription	Fetal Intestine Large	intestine
31	chr11:72594600-72601200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:72594800-72613800	Weak transcription	Colonic Mucosa	Colon
33	chr11:72595000-72600400	Weak transcription	K562	blood
34	chr11:72595400-72602200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:72595600-72601000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:72595600-72601200	Strong transcription	Fetal Muscle Trunk	muscle
37	chr11:72595600-72601400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:72595800-72599600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:72595800-72599800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr11:72595800-72600800	Strong transcription	Placenta	Placenta
41	chr11:72595800-72601200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:72595800-72601400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:72595800-72601400	Strong transcription	Liver	Liver
44	chr11:72595800-72601600	Strong transcription	Fetal Thymus	thymus
45	chr11:72596000-72601000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:72596200-72601800	Strong transcription	Osteobl	bone
47	chr11:72596400-72599600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:72596400-72599600	Strong transcription	Stomach Smooth Muscle	stomach
49	chr11:72596400-72601000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:72596400-72601000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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