Variant report

Variant	rs55845314
Chromosome Location	chr9:94659244-94659245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94658826..94661180-chr9:94661410..94663593,2	K562	blood:
2	chr9:94657831..94659746-chr9:94710124..94712631,2	K562	blood:
3	chr9:94654512..94657434-chr9:94657669..94659838,4	K562	blood:
4	chr9:94643211..94646019-chr9:94657149..94659875,2	K562	blood:
5	chr9:94631828..94632674-chr9:94658603..94659404,2	K562	blood:
6	chr9:94658208..94667163-chr9:94705322..94714120,17	K562	blood:

Variant related genes	Relation type
ENSG00000169071	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10512219	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875037	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94648800-94661000	Weak transcription	Spleen	Spleen
2	chr9:94649400-94663200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:94650000-94662400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:94651200-94665000	Weak transcription	NHLF	lung
5	chr9:94651600-94660800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:94652000-94661000	Weak transcription	Lung	lung
7	chr9:94654000-94661200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:94655600-94661000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:94656400-94661400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:94656600-94660200	Weak transcription	Placenta	Placenta
11	chr9:94656600-94660800	Weak transcription	Right Ventricle	heart
12	chr9:94657400-94660800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:94657400-94660800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:94657600-94661000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:94658000-94660400	Enhancers	Stomach Mucosa	stomach
16	chr9:94658000-94663600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:94658000-94667400	Enhancers	Fetal Lung	lung
18	chr9:94658200-94659400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:94658200-94659600	Enhancers	Primary hematopoietic stem cells	blood
20	chr9:94658200-94660400	Enhancers	Fetal Stomach	stomach
21	chr9:94658200-94661200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:94658200-94661400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:94658200-94662000	Enhancers	Fetal Heart	heart
24	chr9:94658200-94666200	Enhancers	Fetal Kidney	kidney
25	chr9:94658400-94659600	Enhancers	Esophagus	oesophagus
26	chr9:94658400-94660200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:94658400-94660400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr9:94658400-94660800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:94658400-94661600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:94658400-94664400	Enhancers	Fetal Intestine Large	intestine
31	chr9:94658400-94664600	Enhancers	Fetal Intestine Small	intestine
32	chr9:94658400-94665800	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr9:94658800-94659400	Enhancers	Duodenum Mucosa	Duodenum
34	chr9:94658800-94659600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:94658800-94659600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:94658800-94659800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr9:94658800-94663400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:94659000-94659400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr9:94659000-94659600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:94659000-94659600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr9:94659000-94659600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:94659000-94659600	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr9:94659000-94659600	Flanking Active TSS	K562	blood
44	chr9:94659000-94659800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:94659000-94660800	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:94659000-94662400	Enhancers	Fetal Muscle Trunk	muscle
47	chr9:94659000-94663200	Enhancers	Pancreas	Pancrea
48	chr9:94659200-94659400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:94659200-94659400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:94659200-94659400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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