Variant report

Variant	rs55845504
Chromosome Location	chr14:66256968-66256969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11845834	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11850120	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3892139	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4073416	0.83[AMR][1000 genomes]
rs4080329	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4131095	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4131097	0.98[ASN][1000 genomes]
rs59853675	0.80[ASN][1000 genomes]
rs6573625	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7143026	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7158556	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs968540	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66256200-66257200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:66256200-66257200	Enhancers	Fetal Brain Male	brain
3	chr14:66256200-66257400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:66256400-66257000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:66256400-66257200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr14:66256400-66258200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:66256400-66258200	Weak transcription	Spleen	Spleen
8	chr14:66256400-66259200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr14:66256600-66257600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr14:66256600-66257600	Enhancers	Brain Germinal Matrix	brain
11	chr14:66256600-66260200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:66256800-66257200	Bivalent Enhancer	HepG2	liver
13	chr14:66256800-66258200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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