Variant report

Variant	rs558465361
Chromosome Location	chr9:94472592-94472593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv982647	chr9:94456202-94474602	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv521046	chr9:94456714-94476418	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv516266	chr9:94458669-94476418	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3362149	chr9:94471631-94475529	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3402195	chr9:94471631-94475529	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94458000-94473400	Weak transcription	Gastric	stomach
2	chr9:94458000-94489800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:94467600-94474000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:94468000-94474200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:94469400-94476600	Weak transcription	Colonic Mucosa	Colon
6	chr9:94469400-94476600	Weak transcription	Fetal Stomach	stomach
7	chr9:94469600-94474000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:94469600-94474000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:94472200-94472600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:94472200-94472800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:94472200-94473200	Weak transcription	K562	blood
12	chr9:94472200-94476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:94472400-94473000	Enhancers	Primary B cells from cord blood	blood
14	chr9:94472400-94473400	Strong transcription	Stomach Smooth Muscle	stomach
15	chr9:94472400-94474200	Weak transcription	Fetal Brain Male	brain
16	chr9:94472400-94476800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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